NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030055

3300030055: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_1



Overview

Basic Information
IMG/M Taxon OID3300030055 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0134627 | Gp0312875 | Ga0302173
Sample NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size876419832
Sequencing Scaffolds44
Novel Protein Genes45
Associated Families37

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae1
Not Available22
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium 3111
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePeat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomefenpermafrost
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001506Metagenome / Metatranscriptome681Y
F010231Metagenome306Y
F012089Metagenome / Metatranscriptome284Y
F014212Metagenome265Y
F019814Metagenome / Metatranscriptome227Y
F022562Metagenome214Y
F028047Metagenome193Y
F030615Metagenome185Y
F031313Metagenome / Metatranscriptome183Y
F034611Metagenome / Metatranscriptome174Y
F034762Metagenome174Y
F040838Metagenome161Y
F044411Metagenome / Metatranscriptome154Y
F055309Metagenome139Y
F059490Metagenome / Metatranscriptome134Y
F063813Metagenome / Metatranscriptome129N
F064355Metagenome / Metatranscriptome128Y
F066627Metagenome126N
F068474Metagenome / Metatranscriptome124Y
F070832Metagenome / Metatranscriptome122Y
F074658Metagenome / Metatranscriptome119Y
F076572Metagenome118Y
F079956Metagenome / Metatranscriptome115Y
F080676Metagenome115Y
F081918Metagenome / Metatranscriptome114Y
F084758Metagenome / Metatranscriptome112Y
F084877Metagenome / Metatranscriptome112N
F086362Metagenome111Y
F087844Metagenome110N
F088780Metagenome109Y
F091052Metagenome108Y
F092955Metagenome107Y
F096161Metagenome105N
F096292Metagenome105Y
F096552Metagenome / Metatranscriptome104Y
F096680Metagenome / Metatranscriptome104Y
F099181Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0302173_10010658All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium3998Open in IMG/M
Ga0302173_10020749All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2742Open in IMG/M
Ga0302173_10028092All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2322Open in IMG/M
Ga0302173_10037941All Organisms → cellular organisms → Bacteria1960Open in IMG/M
Ga0302173_10053222All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum1622Open in IMG/M
Ga0302173_10058426All Organisms → cellular organisms → Bacteria1540Open in IMG/M
Ga0302173_10084300All Organisms → cellular organisms → Bacteria1260Open in IMG/M
Ga0302173_10086514All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae1243Open in IMG/M
Ga0302173_10091486Not Available1204Open in IMG/M
Ga0302173_10101021All Organisms → cellular organisms → Bacteria → Proteobacteria1140Open in IMG/M
Ga0302173_10114603All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1065Open in IMG/M
Ga0302173_10116603All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1055Open in IMG/M
Ga0302173_10122951All Organisms → cellular organisms → Bacteria1024Open in IMG/M
Ga0302173_10123720Not Available1020Open in IMG/M
Ga0302173_10127892Not Available1002Open in IMG/M
Ga0302173_10132734All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium 311982Open in IMG/M
Ga0302173_10134222Not Available976Open in IMG/M
Ga0302173_10158335All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.890Open in IMG/M
Ga0302173_10160863All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium882Open in IMG/M
Ga0302173_10180952Not Available825Open in IMG/M
Ga0302173_10182612Not Available821Open in IMG/M
Ga0302173_10219726Not Available738Open in IMG/M
Ga0302173_10221972Not Available734Open in IMG/M
Ga0302173_10229013Not Available721Open in IMG/M
Ga0302173_10250779Not Available684Open in IMG/M
Ga0302173_10266324Not Available661Open in IMG/M
Ga0302173_10287894Not Available632Open in IMG/M
Ga0302173_10291440All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium627Open in IMG/M
Ga0302173_10292545All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes626Open in IMG/M
Ga0302173_10295673Not Available622Open in IMG/M
Ga0302173_10299932Not Available617Open in IMG/M
Ga0302173_10324472All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi589Open in IMG/M
Ga0302173_10328625All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes584Open in IMG/M
Ga0302173_10330184Not Available583Open in IMG/M
Ga0302173_10348213Not Available564Open in IMG/M
Ga0302173_10349791Not Available563Open in IMG/M
Ga0302173_10350193Not Available563Open in IMG/M
Ga0302173_10351609Not Available561Open in IMG/M
Ga0302173_10367865All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria546Open in IMG/M
Ga0302173_10388403Not Available529Open in IMG/M
Ga0302173_10392558All Organisms → cellular organisms → Bacteria526Open in IMG/M
Ga0302173_10393519All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria525Open in IMG/M
Ga0302173_10412497Not Available510Open in IMG/M
Ga0302173_10423921Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0302173_10010658Ga0302173_100106585F019814MNEKLHRKVSPPFEGGVVGTIDYLIYTVFYFPTGVVDSLI
Ga0302173_10020749Ga0302173_100207493F031313HQPKDAFPGNETVRVPQHFINGTEVTRIDFGLDYEAVLG
Ga0302173_10028092Ga0302173_100280922F030615MKKQRFKIISYKRDDTSFFETKIKTWIGWVSFSVFYKTDIIHVFSDPSLQKALAYERINQYCEIKGYQKKDIEISEIC
Ga0302173_10037941Ga0302173_100379412F080676MIMKKLIGAVLCIFIFNASCEKDKINENFKDDTSISNIDGKWKVISYEDYEKASITVKTDVDSWNGMDVILTFATDSLYGYCTSNTIFGKYSIAGRYFSITSYGGTKIGQPEWGNLFSDAIYQLRSFKINKNQLRFYYDNEEKSVTLSRD
Ga0302173_10053222Ga0302173_100532221F081918YIYIDNCTENLTDLNNIPTPCPYLLIIYIIISNGVAERRVNLGFILFKNNY
Ga0302173_10058426Ga0302173_100584262F064355MKFNFKFFYYLKQLFHNENPDKKSEVEKRKVGIENNLRWQDDGGPAVDTRPLNPVDDDPVKTGDAPGKDSL
Ga0302173_10084300Ga0302173_100843001F022562SAETTMSFDQLISKFSETEILNTQAMSYVRGGNSDGEGDGGASVIIMPKPPK
Ga0302173_10086514Ga0302173_100865141F034611MQQHQTILSLTTDLLANGGFNHLKDDEISALHHLILRLQEPLTNIQQNLLLTFWNNADAANIPAALLYRCNAVLQQRGRNPIEELHIEMEMY
Ga0302173_10091486Ga0302173_100914862F022562MKNADKSAETTMSFDQLISKFSETEILNTQAMSYVRGGSADGEGNGGEPVIIIPKPR
Ga0302173_10101021Ga0302173_101010212F063813LVRWSQAHGQKLKPSECESKFQPLAEPSHPSKKPSDQLGSGTGSAPIDETNSIERGLS
Ga0302173_10114603Ga0302173_101146032F044411MSRPPLFNQINPDQAIAICTLEQAQQLVDFDNQRVLVSERAGLLLTSAWLPIEKHIGPFVLTVVFHHTETHPSVPDEIQALVNKLKFQVRGQPR
Ga0302173_10116603Ga0302173_101166031F092955MKKLLTFSVLVALGLPLIAQVDHDYNPNDRVPLVNTTITKDLVPLAVVKAVNTQFDKNNPLTWSRFPYALKEYGWVYDVGASDIPLNRYEVTMRTTTGNDFW
Ga0302173_10122951Ga0302173_101229512F001506MNRILYESRCRCKRCKEDFLIVKKRKFSTRSEWKPLQYPKPNEITSKTFQIKYEKKLSSIAKLILNSFRNKYIYYAIDDILYLLKSNPVERDNLLEILYSQVLSLQNNLSVNFFDIWIHEIYINEISKVNKFINNDSQNFEQFTFLTIKLLYKTRIPIKKPESLW
Ga0302173_10123720Ga0302173_101237201F087844MSTTCYLICLQKTERQIKRHKYMNKNTLLFITAFFLLFSLNTTSAQSQSIHFFGSYDRSFGNLIASVSSSLGNIEQDEVSKLKNGSVNQFELGAFINSFGLGIIHNTYSTNATTNFENYDIDRDGRLDNGQLNDKLSLKFTGLEVLYKKAVFSSRFDVLWKIAFGIQSYSIDKTTETSENNPPNNTQTLTGSIFTGLIGAGFDYHINKILSVGIETSLLPGKYKKLKDKASDYYTYEDNVSRLSTGLKLTLTL
Ga0302173_10127892Ga0302173_101278921F031313KDAVPRDETVRVPQYFINGTDVTRIDFGAGYKAVLGWRKALN
Ga0302173_10132734Ga0302173_101327342F080676MCFVIQNDGIIFENKIMPKTLNMKKLLLILCTFIVSVSCDKERINENFQDETSIQNINGTWKVVSYEDFQKASVTVKNDVDSWNGMDVILTFANDSLYGQCTTNTISGKYTIAGRYISIDSYGGTKIGQPVWGNLFSNIVYLIRSFEINEHQLRFFYNNSENSVTLHHN
Ga0302173_10134222Ga0302173_101342222F066627MGLLSQTSYAISTLTVVLTDNFSEMSDGERLLNMNSAIKELRENLGVINSAIIEVETLDNQRMQLRTLNYINTIFK
Ga0302173_10158335Ga0302173_101583351F086362PHDWVINDYSGTYKNVEYSESLIREFTAGIYDDNSIPDDIKQLQYGRIEIDFQYNGGGLDYFMPLFYYGSINKNNTDDNTEEPKFHIAIEIGHYNVIPFPVEYLFYTISTFRQPQYCRDTFSPVIAGGNYTFIVDKRPEGMIFQLKRGENILNILPHAFFPDSSQMFFKDVSSYIDRNKGDSLKKVLMVGKGFAGIDKGIHDFNGQVTSLRIIKYTISNTDSGYELKKVRNQHTENQQIIYTAHDNLSANDKFIILKYQFYPYKFEAGELISGGEMQTGETAKMKNDQPANCYLKS
Ga0302173_10160863Ga0302173_101608632F022562MKNAEIKVKTERNFDQLISKLSDNEILTIQAMSHVKGGTADGTGSEPIVYIK
Ga0302173_10180952Ga0302173_101809522F074658MRENSFQLIKLCCTPTDPAAETKSIGLQADARVVMVFASPSGQFYHDMRNPAHLSGPRHLDSFIVTKNFRPSIRTLQKRMPTLTR
Ga0302173_10182612Ga0302173_101826121F055309MATGSCAFSKKGCLLARDTLVLNRAKPVARARLRQIKSVVAPLSDFHSLQYANNVRQPMTANSLLTLTQSRSQRINPQSL
Ga0302173_10186266Ga0302173_101862662F028047VETLEIDMKGVIFRNDWHLLGLKQIDSMFNEFFIDVAIKPAIEIVDRLKILKVGSLEILEDRSSSTVYRIRQTDEVFHIFQPGGDLFRYTTEDYYLKQPVDELIKEYIKKAPVFKIEKVSDHRDVIHHLKPPKFRALFVDRTFDKVEWIDQPPEDISQIPKLMRKMGAFYASFFRK
Ga0302173_10219726Ga0302173_102197261F076572MKKLIIALFVAFLFIGCTTTSEPSCEQNHTFSMEFTNGSSDAYDLYINDTFQQIMVAKSKVIYDIPAGYWSAEVVQRSGYTVTPIDNVYTNTYESC
Ga0302173_10221972Ga0302173_102219721F010231VRIKNGMLLTHAYVHWLADVQLAGFAPAFTLSFHDSECSRK
Ga0302173_10229013Ga0302173_102290132F022562MKKEKKSAESIRNLEQLVSKLSENEILNIQSMSHVRGGNADGEADGGASVISRPKF
Ga0302173_10250779Ga0302173_102507792F019814MNEKLHKKVSPPFEGGVVGTIDYLIYTVFSFPTGVVDSLIS
Ga0302173_10266324Ga0302173_102663241F014212MKNKLLIAFLFLSASASAQLIHVAGSKAIGLDGGYVKNGFNVSSSITLYKNNNFAYRGSIDYERVDFAISKASIIYVNLELIYNFYTLGENFFLNAKGGILSGVEFISNSVLDKKESQFFVGENIGLCAEYYVTNKIMFNLDLDQRFFQLSKVGKASF
Ga0302173_10287894Ga0302173_102878941F034762CTTLGAVAQDSPFGPNGPAPTGKQQAAPPAQPDHVPDMVCFGNNPRWSFQFGESAARTLGISEGDKYWIGKFMYVDGEWSWHGGPATGSGGGLTATITKGKCVDTVRQMQFGYNGQVYLPEGDIVYGCCRKLKPGEAAVGPHGYIPSTPPPQ
Ga0302173_10291440Ga0302173_102914401F096552MKKKNVFVAASIGLILLLLAACSVPKPVPTPTPTQTAVVLPATGVEYYFVTNKLQVPTTQEQTQTFALNVDGDPQQQPDNKFGDLFTMLTSAVQGIELQSNLDKAVSTGQVVSLHVVKADDPLNDPSVSWAIFTGQKALSAPT
Ga0302173_10292545Ga0302173_102925451F084758EKTIDERWSYELRNTPSVKFRVVFLDYEPGDKSLGEATVDRSGLDIDQVYRRYVGAGMYNTPIVTSLVAYTTQYITKKKADGVLKTDAEIAKECYYCLRKVFLEMYYKGPVHSELEKYFTGKKVYKKMLAAEKKDEKKEEREDEVRMNAVTFATALRTSLAAQGIQSELFVYVPRTLGTWHDAIFMEELDFVMKVKLKDKSYFLEALN
Ga0302173_10295673Ga0302173_102956731F012089PIRLLPSKQRASKPVEVWISDLYEKDGRLLIRYTVCNHGTEPYTIDTPLVYQLDGVRSAQSLYGLQNSQLGDEQAAKLKIKQETPVKVLDGQTQTARIAPGEEAVGVVALDMASSTQPTVLRFQFPGSKQSEDGLSNGQQMQIAAFLVR
Ga0302173_10299932Ga0302173_102999321F096292MKILKTHFRKNDLYQTLICRNDKVAMYETKQEEDIVRCHYEVTRIYIRPAHTAFDVDFEEAEELTSNDQFYYDRSGTFMEKDNAMKHFLKLSKELYRGEKHPSRLDTDLPE
Ga0302173_10324472Ga0302173_103244721F096680VSWHCRNGEHMETILPSVIFVSIVVVFGLDATRKRRDFLKKHKRA
Ga0302173_10328625Ga0302173_103286251F070832MCDSLNFNTCANTDGWGNKLVTIFARHLDNFILTINFSLICQIRDFGSRQILQPRQLYLSPGFAKIAPCWLARRDSFSAKVRGLVSADGATNVY
Ga0302173_10330184Ga0302173_103301841F068474MIFFRVSTISTGSAAAFDGAFARCHGSRLFTLRLLFHHSPAVSFLTSPALGSFSRGLPSRSVLPGANAHF
Ga0302173_10348213Ga0302173_103482131F096161LSDEGASLDGFSQLSVSFSSEAGAVLTFLLTFCVKTKSKSGFGAEA
Ga0302173_10349791Ga0302173_103497911F091052MIALLLMNMLAKARPRIKEPAPGKALKSLPMGLLSRFQLQRSSLFALLTGIVFGIVTGWLPLIFAGIVGVIALITIFIPMHYTFTTKGIALGDGMFYPWNGFSGFVVTESKLKFNHPSLFGRITLFMKPAEMTNVLEYVERYVKTK
Ga0302173_10350193Ga0302173_103501931F088780VNSLKKIERALTTIAIAPLSGLEKKERDRRLEERLKRLEQKSRRN
Ga0302173_10351609Ga0302173_103516091F099181LAKNMPKKENAEAEKKKPNDLDNFVKTGKTKHVFGYTAEEYSKEIKKDENGKMHEGTMSVWYAKVDFDPEMMFSLGMGSLAGGGSQSRMNQSHPNNMIGLGLTQKNYLLIEMDFSEKGGKSGTGMKVVSIEKTNFNKSTDGYFIKNYAGMSMKEMMMKENEER
Ga0302173_10367865Ga0302173_103678651F079956AKGISYVVTKDNMTAAFGAERWTAFMAKLTEKDKYFSTVIMSISLMPAEKLIVFFDEMCKEFFNDDKMQYVKFGKAGAKAVLSPNGTYRSFMLTKDIKQFVESILPKVYSMYFDGGVATARLENNVVHLKFTGLEIKYIYFEYLLLGYFQQAIKMFGKNSVVKKVRSLASGDQDIYFTYA
Ga0302173_10388403Ga0302173_103884032F031313DSANDAVPVDETVQVPQYFIDRTEFTNIDVGAGYKSVLGWRKALN
Ga0302173_10392558Ga0302173_103925582F059490EKMSKSPWIGSLKDGKDLICPFCDQPVKPCKSDPSAMCERMLLGGTEEKEIVDALKDSSRSRLGVCLSCGQQISMAHFRKHPTAELCTECVKKGKKTKVKKAV
Ga0302173_10393519Ga0302173_103935191F040838LARVSPAAFPEADLEFYDRARAAFERKLYHWIADVEDLTLTRIYPQNRTFLRLFVDGGRMIRASVYHLHPRGVVMSMLQLVQLYPRHLRVIELVSEIQGTFLVTSNTHGVDRLEPPPEAKIERLRLQTPLDEIVKRHEQRITELLRGFPERTPVHFETFEDLVASIARAHVTRS
Ga0302173_10412497Ga0302173_104124972F031313IDGSVDTCHGEIVSVPSKKQGTSASARQPKDAVPGDETVRMPQYFINGTEFKGIDFGAGYKTVLGWRKALN
Ga0302173_10423921Ga0302173_104239211F084877MPGSAGGRRKRIRTTGYLADGPPSLRRLTRRWITLAESRGSEGGGLWVTHLTWTRKREGTAAWWESVERCEGVEGAAAQGPCDMAKTRLFEAQFPVMEMCILRRTTPGAEPPASGESPLLRPNPSGWWAVSNELTQGNGKAAYVTLDTSNARGIRDHLRGASP

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