NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033781

3300033781: Hot spring water microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_P



Overview

Basic Information
IMG/M Taxon OID3300033781 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136052 | Gp0348979 | Ga0326759
Sample NameHot spring water microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_P
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41249552
Sequencing Scaffolds10
Novel Protein Genes13
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.1
All Organisms → cellular organisms → Archaea → TACK group1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon1
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Wyoming
CoordinatesLat. (o)44.6903Long. (o)-110.7293Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008606Metagenome / Metatranscriptome330Y
F013613Metagenome / Metatranscriptome269Y
F024139Metagenome / Metatranscriptome207Y
F028973Metagenome190Y
F035135Metagenome / Metatranscriptome173Y
F036493Metagenome170N
F039967Metagenome162N
F049309Metagenome / Metatranscriptome147N
F083831Metagenome / Metatranscriptome112Y
F085903Metagenome111Y
F102130Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0326759_00126Not Available18763Open in IMG/M
Ga0326759_00128All Organisms → cellular organisms → Archaea18349Open in IMG/M
Ga0326759_00135Not Available17747Open in IMG/M
Ga0326759_01695All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus → unclassified Acidilobus → Acidilobus sp.2772Open in IMG/M
Ga0326759_01896All Organisms → cellular organisms → Archaea → TACK group2577Open in IMG/M
Ga0326759_02285All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon2256Open in IMG/M
Ga0326759_05006Not Available1308Open in IMG/M
Ga0326759_05971All Organisms → Viruses → Predicted Viral1150Open in IMG/M
Ga0326759_06346Not Available1101Open in IMG/M
Ga0326759_08078Not Available926Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0326759_00126Ga0326759_00126_6452_6715F039967MIASIGVGVGLVAPYGAIENVTVPEGLKSSQDIMASAVTVLLGLTVFGTSVRNMLQPPYGGTWTWLNTSTSVYMSVGAFITIRDKAD
Ga0326759_00128Ga0326759_00128_4073_4339F008606VAEARDPEDPDSRSYDKLVELSEQVNELRGQVVSLAERVTRLEEENRWLRQELAEIKGAVTDIRRNVWMILASTITVLVTVIIGLIVH
Ga0326759_00128Ga0326759_00128_8332_8595F039967MIASIGVGVGLLVPYGAIEKVTVPEGLKLSQDIMASAVTVLLGLTVFGTSVRNMLQPPYGGTWAWLNTSTSLNMSVGAFITIRDKAD
Ga0326759_00135Ga0326759_00135_11777_12103F028973MGMAQVTEEEEKRAQETVDEIIRRLEEYHVNGNWDEFFDNDVLDVLLLTTPDKEDVLGFSILLSYGGPNVEFLCDRGDGKIIYSYGDVEVKKDVDPDICDDVINYLDS
Ga0326759_00135Ga0326759_00135_17269_17745F013613MPRPRKFPDGGVVISTYVPYELYEKVKELARSKGKNISEIAYELIKRGLEASDASAADPPDPPEDALHVALKGLEPLERERVLQFIKGLEDAEAKLAKLGPNVRQARAGRPTLLDVVNQQEVTKLKGTVVDLKRTYERSIKRIVRDPAALNMIGERLLR
Ga0326759_01695Ga0326759_01695_2102_2374F036493VLSSTLVWVLTVAVAVVASVKVRQSSVFNALIAIASTLIWATVAPGVNLHIRYWPTVAFALLVAIFIFEVFAFGLIMLWKEYALKGYQTD
Ga0326759_01896Ga0326759_01896_1979_2215F085903MFKIAFCVLVGVNSLTKAFLTAVVILLVVADSLYETAIGMKTSDYALYLRTHPPSLALFIVLYALVGVFFYIIARWWS
Ga0326759_02285Ga0326759_02285_3_389F013613KGKNISEVAYELIKRGLEANGASAADPPEDALQGALKSLEPLERERVLQFIRELEEAEAELARLGPEAVRQARAMRLTSPELMNLDKKVRLLRHTYEKTIKKSVRSPEVLDVIGERLLRLMKELGIPV
Ga0326759_05006Ga0326759_05006_99_260F083831MYKIEKIEINGNKIYCTIYNKYERFNNIPIEKLIVIRKNGKLYAKLKFDKENG
Ga0326759_05971Ga0326759_05971_806_1150F035135MIVNEKFTTPLQLRRDTLVPCSVYDQQFISSFFFDVIDDKEYEYIMFTFLMKHAFKIYLNVWRQQREFINYLKTFKDEFKDAFDYYQRLSVTTQQRIYETTHVIACFFTFDDDVR
Ga0326759_06346Ga0326759_06346_614_1078F024139MAQEVAKKKAKKKTLNLKITVYQDPKDNLRFKADIKVNDWTSSFGGWLDRKYIIDYLNMDLQNAWAYLGFVERAKTEESRQSDLNILRLHLEDALAHILAYEIAQDNVVTKEEICNRWWEAVGANECAYIECAGLAKEDLDACMESCKKEMCGS
Ga0326759_08078Ga0326759_08078_571_924F049309AQVFPFSVYKWSPEKNAYRYLTPEDIPKGWRLIPIEGGGLGLCLIDMHVFDLLDEPYFKWELYPWNPPPGGLSEDLYFFRKLIDKGIQPYADLQVTASHYLAPPVALKFDGTLYNTP
Ga0326759_15408Ga0326759_15408_334_549F102130MHVFDLLDEPYFRWELYPWNPPPGGLSEDLYFFKKLIDKGIQPYADLQVTASHYLAPPVALKFDGTLYNTP
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