NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000061

7000000061: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763860675



Overview

Basic Information
IMG/M Taxon OID7000000061 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052533 | Ga0031243
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 763860675
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size73136561
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-101
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F036281Metagenome170N
F040685Metagenome161N
F041827Metagenome159Y
F043990Metagenome155N
F051211Metagenome144N
F053092Metagenome141N
F057446Metagenome136N
F058221Metagenome135N
F066860Metagenome126N
F071328Metagenome122N
F072446Metagenome121N
F097490Metagenome104N
F098763Metagenome103N
F103432Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C3039953All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium553Open in IMG/M
C3056064All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria654Open in IMG/M
C3072672All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium836Open in IMG/M
C3076736All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium906Open in IMG/M
C3086107All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1134Open in IMG/M
C3099505All Organisms → cellular organisms → Bacteria1973Open in IMG/M
C3100873All Organisms → Viruses → Predicted Viral2189Open in IMG/M
C3101721All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2331Open in IMG/M
C3106191All Organisms → Viruses → Predicted Viral3989Open in IMG/M
SRS014888_WUGC_scaffold_14824All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1559Open in IMG/M
SRS014888_WUGC_scaffold_29305Not Available1188Open in IMG/M
SRS014888_WUGC_scaffold_30875All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae7328Open in IMG/M
SRS014888_WUGC_scaffold_31301All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium516Open in IMG/M
SRS014888_WUGC_scaffold_33254All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-101539Open in IMG/M
SRS014888_WUGC_scaffold_6531All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1051Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C3039953C3039953__gene_90498F040685RIQTAFIMKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE
C3056064C3056064__gene_98062F066860MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLTIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE
C3072672C3072672__gene_106509F097490MFLKTQKMNKKMNVFCKIILPLLCIISCSKRDEIEVYNMELDEEKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQDIGGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C3076736C3076736__gene_108790F041827LALGCLLLSCNRDNETNETPAPPQNEKLVLLKSASPGGIELNYKNRNEIESLSTDGMYGKSDINYEYDAYGRIIKERRFSHRYDYGETNITYQYDGQGRLTSSHAISTEFYPGTGLTPRCSVEKKHAYTYQGNKVIVKIEMGTDTCSAIPETGKEKTITLLVENGKVVKSLDENNQIIETIEYHNTKNALRNIKGFPALVVEFYIRAFTYKLNWYNNIELVQDLRFIDNVKTRNYPNGNYIMYEYRTENYEITDKDYPYKVIALDKSSSDPTQQSLVYMNERNYIEEQ
C3086107C3086107__gene_114354F057446MNSISFGKTTVTSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
C3099505C3099505__gene_124442F071328MSRKHWTFINLIRYIEEYERNPLLIERMKWKFIPEGECIVEFVELCKHLVLERTIDSKESLTTAIYLRYSQQLLLKKKRAIRRLGIGKKNVSAILRQCGRHYKEYGDDEHRVFFLDTDINIYFCKHYQLPMYIIQRIEFSNKEYRSFILKVLPGKKDEW
C3100873C3100873__gene_125759F036281MITLIKVDEGPVNIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSVREGKPAPFFYESRQYHVKSFMRVPGSTDLRITAEREKDHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWILENVEWAADTIRYF
C3101721C3101721__gene_126628F051211MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIDITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSNTTTMAPLRCLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C3106191C3106191__gene_132401F018385MADLINSWLPYQELSIEKDRDPVTDDEIIYGNNVKHFTLTVYSPEGRVSKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFTHDGLNELVFMPDSRRRAVSQLSFDN
SRS014888_WUGC_scaffold_14824SRS014888_WUGC_scaffold_14824__gene_14330F053092MQSDQGLILCLTHTFLILGALILEPAEMEDTMDDHTVQLFGILVAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELIAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK
SRS014888_WUGC_scaffold_29305SRS014888_WUGC_scaffold_29305__gene_29400F103432MKLIHSLFSLSLLLALSGLFCTTACQDEAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTAAGLRVSEPRRIVPMLPRQLHVEMEGKTIFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSCPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDDWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY
SRS014888_WUGC_scaffold_30875SRS014888_WUGC_scaffold_30875__gene_31240F072446MKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFRFIVEEHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKELETLARQLHALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYSGRVKYNSGIVTLDCEDTESLTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVPEKEIER
SRS014888_WUGC_scaffold_31301SRS014888_WUGC_scaffold_31301__gene_31825F043990MIKKLGIIFTFGVIILGIVVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL
SRS014888_WUGC_scaffold_33254SRS014888_WUGC_scaffold_33254__gene_34704F058221MGKIKNFQDLKNQKEELKAEIKEIESVLSFENPRKSFGVITSGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDHFQQRETAKSLSKLI
SRS014888_WUGC_scaffold_6531SRS014888_WUGC_scaffold_6531__gene_6232F098763MDRRASLRILSTVLYLATKLFKAVVRTTISYDPSDEVEGKGGMNAIPTAVDE
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