NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000194

7000000194: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158337416



Overview

Basic Information
IMG/M Taxon OID7000000194 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0052699 | Ga0031301
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 158337416
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size117758500
Sequencing Scaffolds29
Novel Protein Genes31
Associated Families30

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027205Metagenome195N
F030786Metagenome184N
F033081Metagenome178Y
F040685Metagenome161N
F041827Metagenome159Y
F042387Metagenome158N
F043235Metagenome156N
F043990Metagenome155N
F045567Metagenome152N
F051211Metagenome144N
F051212Metagenome144N
F053092Metagenome141N
F054109Metagenome140N
F054110Metagenome140N
F054111Metagenome140N
F057446Metagenome136N
F061925Metagenome131N
F061926Metagenome131N
F061927Metagenome131N
F064819Metagenome128N
F066860Metagenome126N
F068942Metagenome124N
F076191Metagenome118N
F080165Metagenome115N
F084342Metagenome112N
F084362Metagenome112N
F090516Metagenome108N
F095633Metagenome105N
F097490Metagenome104N
F103433Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2502387All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae605Open in IMG/M
C2503227All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria609Open in IMG/M
C2521644All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila723Open in IMG/M
C2533665All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria833Open in IMG/M
C2544769All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium981Open in IMG/M
C2552848All Organisms → Viruses → Predicted Viral1143Open in IMG/M
C2566766All Organisms → cellular organisms → Bacteria1701Open in IMG/M
C2571085All Organisms → Viruses → Predicted Viral2046Open in IMG/M
C2585699All Organisms → cellular organisms → Bacteria12869Open in IMG/M
C2585973All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae15350Open in IMG/M
SRS022077_Baylor_scaffold_18595All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria857Open in IMG/M
SRS022077_Baylor_scaffold_25253All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1515Open in IMG/M
SRS022077_Baylor_scaffold_26043All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes24925Open in IMG/M
SRS022077_Baylor_scaffold_26243All Organisms → cellular organisms → Bacteria4590Open in IMG/M
SRS022077_Baylor_scaffold_26306All Organisms → cellular organisms → Bacteria → Proteobacteria13809Open in IMG/M
SRS022077_Baylor_scaffold_29257All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae13219Open in IMG/M
SRS022077_Baylor_scaffold_31248Not Available9221Open in IMG/M
SRS022077_Baylor_scaffold_33921All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1489Open in IMG/M
SRS022077_Baylor_scaffold_44126All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae10733Open in IMG/M
SRS022077_Baylor_scaffold_46639All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae538Open in IMG/M
SRS022077_Baylor_scaffold_47657All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae49329Open in IMG/M
SRS022077_Baylor_scaffold_50931All Organisms → cellular organisms → Bacteria4547Open in IMG/M
SRS022077_Baylor_scaffold_52017All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum6586Open in IMG/M
SRS022077_Baylor_scaffold_52670All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae49747Open in IMG/M
SRS022077_Baylor_scaffold_56132All Organisms → cellular organisms → Bacteria7292Open in IMG/M
SRS022077_Baylor_scaffold_56407All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria989Open in IMG/M
SRS022077_Baylor_scaffold_56510All Organisms → cellular organisms → Bacteria20403Open in IMG/M
SRS022077_Baylor_scaffold_57483All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae47626Open in IMG/M
SRS022077_Baylor_scaffold_57739All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella41323Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2502387C2502387__gene_146179F045567GGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQAERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
C2503227C2503227__gene_146501F066860MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHVSKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE
C2521644C2521644__gene_153582F068942MIRKILSLPTLALCFTLGSALFAGCNEDYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSYASTLDTFTSHSFSEADKDTAYYKDIVIYLTRNKRERTTTLKLVAPPNRTQQPKQFDFSIGVTPLGTYI
C2533665C2533665__gene_158325F033081MAWLLRRVMPQDPRPVFVWPRLVAAIGNVGYFSRRGFSVLAVGLIIVTIATIKILLFVPGLNQSVVSLLTRGLETFLPTGWATIAAWVVGTTGVFLIGSFTSSYTPSQRLLYSLEATGCGVYDALLLLALIEEQAFRSGSEKWSWHGRARASVCFGLIHVTNIWYSFAAGIALSATGFGFLLVYLWYYRKYRNQIVATAAAATVHTLYNVIALSLIVVAAAIILVIDIAKMM
C2544769C2544769__gene_162727F041827LENNETPAPAPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE
C2552848C2552848__gene_166150F054109MIKERINMTGRPKSKKGVKVHTAFKIYPKDKERAQVMADKLDMSLSAYINKAVLERLAHDEKSEA
C2566766C2566766__gene_172750F054111MNKSLESITHEEFLKLMERLKNLQEFTFLEYIIAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTADRDLFLNILDKEILFLI
C2571085C2571085__gene_175126F027205RLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPKRIRKRAENERD
C2585699C2585699__gene_188349F030786MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
C2585973C2585973__gene_189005F057446MNSISFGKTIITSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS022077_Baylor_scaffold_18595SRS022077_Baylor_scaffold_18595__gene_22945F095633MGNYKNSAEVWRREGLTEDELRTMGILAMEATEKLKKTIIRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIVTAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN
SRS022077_Baylor_scaffold_25253SRS022077_Baylor_scaffold_25253__gene_31954F053092MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS022077_Baylor_scaffold_26043SRS022077_Baylor_scaffold_26043__gene_33090F042387MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK
SRS022077_Baylor_scaffold_26243SRS022077_Baylor_scaffold_26243__gene_33345F084362MSLMNCTFTVRWSDEKNEPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNKPAGRLQDSEKQAEAAAEQKGFWWQE
SRS022077_Baylor_scaffold_26306SRS022077_Baylor_scaffold_26306__gene_33432F103433MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFAVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVSYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS022077_Baylor_scaffold_29257SRS022077_Baylor_scaffold_29257__gene_37473F061927MKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKENEAREYCECAMNKLNENLSNDEIIDISMDNPPKDLDERIDKAISSCIGE
SRS022077_Baylor_scaffold_31248SRS022077_Baylor_scaffold_31248__gene_40262F076191MKIIAENPAEEVLLWRIKALSDELVNQDNRYTRMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTICVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDV
SRS022077_Baylor_scaffold_33921SRS022077_Baylor_scaffold_33921__gene_44120F043235VDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRHMDEVIPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS022077_Baylor_scaffold_44126SRS022077_Baylor_scaffold_44126__gene_58657F061926MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSNKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS022077_Baylor_scaffold_46639SRS022077_Baylor_scaffold_46639__gene_62458F084342VSAQCGAKLFLLGGYLAIPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS022077_Baylor_scaffold_47657SRS022077_Baylor_scaffold_47657__gene_64161F097490MNIFCKIILPLLCIISCSERKEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVYIWDDICKEEYYAMREIVLLPKKSVKKIKYKYDNEEYIEIVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
SRS022077_Baylor_scaffold_50931SRS022077_Baylor_scaffold_50931__gene_69934F051211MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGIFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRYLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
SRS022077_Baylor_scaffold_52017SRS022077_Baylor_scaffold_52017__gene_71910F043990MIKKLGIIFIFGVIILGIAVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNIANGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL
SRS022077_Baylor_scaffold_52670SRS022077_Baylor_scaffold_52670__gene_73167F061925MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDNIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
SRS022077_Baylor_scaffold_56132SRS022077_Baylor_scaffold_56132__gene_81875F064819MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERTDLEDLTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQEI
SRS022077_Baylor_scaffold_56407SRS022077_Baylor_scaffold_56407__gene_82687F033081MAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKSSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATATAWTVGMAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTLLLLALLEEQAFRSGSEKWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYCSQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
SRS022077_Baylor_scaffold_56510SRS022077_Baylor_scaffold_56510__gene_83103F040685MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLDKFKKLRDGPSQQTFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE
SRS022077_Baylor_scaffold_56510SRS022077_Baylor_scaffold_56510__gene_83104F051212MKKFFFIFVLYWLHSFNGTEKAMTTSPDTQKTNISEKQNTEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTDERTIADLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTIKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLYNHLNLEK
SRS022077_Baylor_scaffold_57483SRS022077_Baylor_scaffold_57483__gene_88193F080165MKSIKILLLLLSLTACNNKTKTISTLDLEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
SRS022077_Baylor_scaffold_57483SRS022077_Baylor_scaffold_57483__gene_88210F090516MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTIEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIEPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLRALEEYTSDEYEGVSDAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPEDTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK
SRS022077_Baylor_scaffold_57739SRS022077_Baylor_scaffold_57739__gene_90655F054110VLDVNYQPTIKKLLKALQMNGRRYVVDVRQLWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD

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