NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000270

7000000270: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764325968



Overview

Basic Information
IMG/M Taxon OID7000000270 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052788 | Ga0031328
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 764325968
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size85651467
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus cereus group → Bacillus thuringiensis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
Not Available2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043235Metagenome156N
F046431Metagenome151Y
F047508Metagenome149N
F054110Metagenome140N
F055792Metagenome138N
F067846Metagenome125Y
F067847Metagenome125N
F082826Metagenome / Metatranscriptome113Y
F094007Metagenome106N
F105378Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C6899804All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes530Open in IMG/M
C6915831All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus cereus group → Bacillus thuringiensis587Open in IMG/M
C6965321All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes981Open in IMG/M
C6965923All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales991Open in IMG/M
C6968689All Organisms → Viruses → Predicted Viral1039Open in IMG/M
C6970947All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1084Open in IMG/M
C6984834Not Available1549Open in IMG/M
SRS048411_WUGC_scaffold_21908Not Available1772Open in IMG/M
SRS048411_WUGC_scaffold_26941All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria508Open in IMG/M
SRS048411_WUGC_scaffold_28246All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales5757Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C6899804C6899804__gene_96529F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQAQQDPKYKE
C6915831C6915831__gene_105832F046431KIIIVSILLIIMLTYTQTLVFATESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSSNFETIGLTDFSPEAIDEEVKVLNVYPHSKNVGRLWPGSTAFQSLPMVNVTYLDGRTETIEKSALLKVWMEGRNIK
C6965321C6965321__gene_138464F054110VNYQPTIKKLLKALQMNGRRYVVDTRQSWSKYDKPCKVYIVSRMYTEEEYKLTFPEKYKKGKTFKEKQLYKKESEYSST
C6965923C6965923__gene_138918F043235SDEGHLLIDLCDDDPRSLCGGLGIVTRHPEGAVALFIGLAHRDQCDIDRIDTIPKEIWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEDFYVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGVKGGRSMASNVLLPGSAH
C6968689C6968689__gene_141088F067846MSIIADWERQEFNKYDRRCCAEDAYNEAVEREIECIEEDISNGDSEELWKFSEKAFEDDDFVKAIALGNDVEEMRICILKSLAEERIEQRRKDYEKGFILND
C6970947C6970947__gene_142857F082826MSKYTIKFNYKASIVIEVEGDFRHEGDALDKAREIAEDADIEEFNIGEEMESKILNVE
C6984834C6984834__gene_155023F105378MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNAPVPMQDHLENNQIGYDSTNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVNE
SRS048411_WUGC_scaffold_21908SRS048411_WUGC_scaffold_21908__gene_9497F055792VEIASEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVITEAMVTGALERDLAIDCALEEVRPVLIDKGDDGTEAGTTWSRHPLETLQQEGNILFEGSMLPCEACGVDSRSSVKSLDLESRIIGKAIEPVALPDVTCLDESIPLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS
SRS048411_WUGC_scaffold_26941SRS048411_WUGC_scaffold_26941__gene_13927F094007LKTVEVLELARPSRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACETCPLKLDCELYGKLGGAALSDVLDYKKVRTATSLTKAGKRRSGWNKGCIDNNA
SRS048411_WUGC_scaffold_28246SRS048411_WUGC_scaffold_28246__gene_15933F047508MLGHRLVEGRVKYPYLRNLGEYLRHGFDTEDVGWVVKRSELCALMEHIYYLWGDTYALCKALCTVYEAVTDGVDLIEGLHEVLFFENVEDNLYAARVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP
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