NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000599

7000000599: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1



Overview

Basic Information
IMG/M Taxon OID7000000599 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053171 | Ga0031280
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size72135333
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella bryantii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032313Metagenome180N
F040149Metagenome162N
F040685Metagenome161N
F043235Metagenome156N
F045567Metagenome152N
F047508Metagenome149N
F055792Metagenome138N
F067846Metagenome125Y
F073671Metagenome120N
F078842Metagenome116N
F080164Metagenome115N
F094006Metagenome106Y
F095633Metagenome105N
F098763Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2620538Not Available587Open in IMG/M
C2627044All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria643Open in IMG/M
SRS019022_WUGC_scaffold_14538All Organisms → Viruses → Predicted Viral3692Open in IMG/M
SRS019022_WUGC_scaffold_21050All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales35224Open in IMG/M
SRS019022_WUGC_scaffold_25573All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales51710Open in IMG/M
SRS019022_WUGC_scaffold_26233All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas36686Open in IMG/M
SRS019022_WUGC_scaffold_29076All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales36982Open in IMG/M
SRS019022_WUGC_scaffold_35973All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella bryantii5812Open in IMG/M
SRS019022_WUGC_scaffold_51830All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis11549Open in IMG/M
SRS019022_WUGC_scaffold_52604All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella13069Open in IMG/M
SRS019022_WUGC_scaffold_61444All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria834Open in IMG/M
SRS019022_WUGC_scaffold_61976All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales978Open in IMG/M
SRS019022_WUGC_scaffold_65918All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales16823Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2620538C2620538__gene_110836F073671MNKEQAEHELAELHEKERSLEKALELVREKIRELVNYTNKNKGQK
C2627044C2627044__gene_112867F095633MGNYEKSTEAWRREGLTEGELRTMGALAVEATEELKKTTIRKEVVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN
SRS019022_WUGC_scaffold_14538SRS019022_WUGC_scaffold_14538__gene_12016F067846MSIIAEWERKTFNDYDRRCCAEDAYNEAVEREIECIEEDISNGDSDALCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILNY
SRS019022_WUGC_scaffold_21050SRS019022_WUGC_scaffold_21050__gene_19111F045567MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS019022_WUGC_scaffold_25573SRS019022_WUGC_scaffold_25573__gene_24104F094006MWSTLEPAGPTGALYEPAVCVEAHIGELQAGSIARRGLFAFGRSNVLAVAELGAKAPHAIDMYDIALCKPLSELFAEELEYAFNFGA
SRS019022_WUGC_scaffold_26233SRS019022_WUGC_scaffold_26233__gene_24926F043235MDEVVASDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVNTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYYRSHGFKGGRSMTSNVLLPGSAH
SRS019022_WUGC_scaffold_29076SRS019022_WUGC_scaffold_29076__gene_28324F098763MDRRASLRILSPALYLATKFFKAVVRTTISYDPSDEVEGKGGMNAIPTAVDE
SRS019022_WUGC_scaffold_35973SRS019022_WUGC_scaffold_35973__gene_36474F032313MYRFLILIFAITLMACDNNTPQGKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGINVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK
SRS019022_WUGC_scaffold_35973SRS019022_WUGC_scaffold_35973__gene_36475F032313MACDNNTPQEKPHEQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEEK
SRS019022_WUGC_scaffold_51830SRS019022_WUGC_scaffold_51830__gene_56869F040149VADEGAEELRGEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPRLAPVWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVAQLLNIHRYVYYP
SRS019022_WUGC_scaffold_51830SRS019022_WUGC_scaffold_51830__gene_56870F055792VEIASEALDSTSAVAHRILLLTTQLGESLLASLGAENGVIAEAMVTRALERDLAIDCALEEVRPVFVDESDDSTEAGTTWSRYPLETLQKEGYILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGEAIEPVALPHVARLDESIALQGIGGLRDLLVTPDVSETDYLQTPREEGTDLLQLMSIIARKYQLFHTFVS
SRS019022_WUGC_scaffold_52604SRS019022_WUGC_scaffold_52604__gene_57835F080164MFCALFQIISNSFSIFASKFNYPLSRNSRFVSFMRPTSFVLFILLWMVGLTLSAAPQVTLRERANAFPLITEKDPSEIYAPYAWRLPVVPLRLDNREIRNFAKYPALPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLLYKGQEGRLVLCEYYESHRGDLFLNAANAHPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
SRS019022_WUGC_scaffold_61444SRS019022_WUGC_scaffold_61444__gene_71309F078842SIYKTADNDGLIAHVYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWCKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKSLSLSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGG
SRS019022_WUGC_scaffold_61976SRS019022_WUGC_scaffold_61976__gene_72304F040685MKKLLFKLFFALAFASISLHGQEKIQQVEFNSFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNASGNDHDREVWYDLLQIIAEEFGKKGVYE
SRS019022_WUGC_scaffold_65918SRS019022_WUGC_scaffold_65918__gene_82472F047508MLGHRLVEGRVKYPYLRDLGEHLRHGFDTEDVGWVVKRSELGALMEHIYYLWGDTYALSKALCTVYKAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGATTVEDQDFHKELYYMVRCELILSSP
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