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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000633 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053209 | Ga0030484 |
| Sample Name | Human stool microbial communities from NIH, USA - visit 2, subject 763577454 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 187617216 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp. | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | National Institutes of Health, USA | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032286 | Metagenome / Metatranscriptome | 180 | Y |
| F082887 | Metagenome / Metatranscriptome | 113 | Y |
| F097172 | Metagenome / Metatranscriptome | 104 | Y |
| F101356 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C2455869 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 2145 | Open in IMG/M |
| C2478376 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp. | 4658 | Open in IMG/M |
| SRS015065_WUGC_scaffold_29774 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 624 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C2455869 | C2455869__gene_260437 | F082887 | AKYTINVLAIISALVTGINAVEGITIPYAIQIVQVIAVVQGVISTYLLGQKAISNREKK |
| C2478376 | C2478376__gene_272662 | F097172 | MKKNVFKKMMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYRYHLEGYDKNGYPVNGFSKTSFYKDLNSLPSIKVGKTTINVPAVTSSVKSVSKEKDNPEYVTYVKFKALKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQVSKTGKKYCLNSIEDSDTIGKYDTLYENNYLARLRTILDNYKTEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQTYVFSVDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDINIEYRK |
| SRS015065_WUGC_scaffold_29774 | SRS015065_WUGC_scaffold_29774__gene_74045 | F032286 | QIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI |
| SRS015065_WUGC_scaffold_39762 | SRS015065_WUGC_scaffold_39762__gene_104436 | F101356 | VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |