NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Coalbed_GAIGPUK02JH6Z7

Scaffold Coalbed_GAIGPUK02JH6Z7


Overview

Basic Information
Taxon OID2035918007 Open in IMG/M
Scaffold IDCoalbed_GAIGPUK02JH6Z7 Open in IMG/M
Source Dataset NameCoalbed microbial communities from New Mexico, USA - 340
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterVirginia Polytechnic Institute and State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)555
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From New Mexico, Usa

Source Dataset Sampling Location
Location NameNew Mexico
CoordinatesLat. (o)36.728056Long. (o)-108.220833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105430Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Coalbed2_3721280F105430GAGGMTSASSQQFFETFPPNVARAILEGRPLRIHAAKVSVVRDKTGAAFAIDTLPRDGRPKEWERTTQRSARS

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