Scaffold Ga0073353

Basic Information
Taxon OID	3300005225 Open in IMG/M
Scaffold ID	Ga0073353_1058668 Open in IMG/M
Source Dataset Name	Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, bulk metagenomes as controls for mini-metagenomic methods
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, bulk metagenomes as controls for mini-metagenomic methods

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Stanford University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11782
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (100.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11782

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (100.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.564833	Long. (^o)	-110.86325	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.564833

Long. (^o)

-110.86325

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073353_105866810	F069506	GGAGG	MQLEQLTYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDDTCFPNDIPELIMRTVEKIIGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFINVAGTVVYYEDIVRLVIKLLDQIQSALADA*
Ga0073353_105866811	F100012	AGGAGG	MDREKVLQALKEAQAEYNIKNLDRLVREAWEEGDVLYAEIVVELTERAVEILFNQHFLWVHIVESEDCEEWIPDGWYSFVAVHPETGQCLTFLNDPVYRCKSASFRARIRSADDAVDAVMRLAELIERNLKSRAVE*
Ga0073353_105866814	F080678	GGAGG	MFVRKVDAKTTPISEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRHGVLQAVGYKWRDIEEFEHMRVLVARR*
Ga0073353_105866815	F088087	AGGTGG	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGDE*
Ga0073353_105866818	F092976	GGAGG	MMVQEILHWKQELRQVKQEFLQVWQKCPRCGARWVDISWDAESDHEFLLVECRSGHLFRADEQFWLFDCDDYSDAGVYVPSEETETTEVSAYAG*
Ga0073353_10586684	F104114	AGGAGG	MERLRLWRSMTQDEKFAAAERELKDAVVARYDEFADEWSISRSVEAIAPSALAEIVIQTVEALLGLQWQLEWDYDADADDMELDSGATAYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRSQVSLIKEVK*
Ga0073353_10586689	F086364	AGGAGG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPWTVEEAVEELTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILSIDDAVQAVEYFLRLVQQA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073353_1058668

Overview

Ecosystem & Geography

Associated Families

Sequences