NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073353_1067420

Scaffold Ga0073353_1067420


Overview

Basic Information
Taxon OID3300005225 Open in IMG/M
Scaffold IDGa0073353_1067420 Open in IMG/M
Source Dataset NameHotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, bulk metagenomes as controls for mini-metagenomic methods
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4847
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.564833Long. (o)-110.86325Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080678Metagenome115N
F088087Metagenome109N
F092976Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0073353_10674203F080678GGAGGMFVKKVDAKTTPIAEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNSDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
Ga0073353_10674204F088087AGGTGGMKASDGSVWLPVTVSSAPCEICKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEQFIAGGEE*
Ga0073353_10674207F092976GGAGGMTVQEILHWKHELRQVLQEFLQVWQKCPRCGAKWADTAWDAESDHEWLIVECKAGHLFKADEEFWLFDYNGSGVYVPSEETEMTEVSAHAG*
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