Scaffold Ga0079490_100087

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079490_100087

Scaffold Ga0079490_100087

Overview

Basic Information
Taxon OID	3300005794 Open in IMG/M
Scaffold ID	Ga0079490_100087 Open in IMG/M
Source Dataset Name	Subglacial sediment microbial community from Lake Whillans, Antarctica - at 0-2 cm depth
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4282
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Source Dataset Sampling Location
Location Name	West Antarctica
Coordinates	Lat. (^o)	-84.24	Long. (^o)	-153.694	Alt. (m)		Depth (m)	0 to .02
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025775	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079490_1000873	F025775	AGGAG	MKQFMSFQNFPMVVVTLMIIWAWISILSVLIASFF*

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