NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075432_10020212

Scaffold Ga0075432_10020212


Overview

Basic Information
Taxon OID3300006058 Open in IMG/M
Scaffold IDGa0075432_10020212 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2277
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013919Metagenome / Metatranscriptome267Y
F031559Metagenome / Metatranscriptome182Y
F081533Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0075432_100202122F013919GGAGGMEIVFWVIIAIIVLAIFYVCALSLRKRKEAFGREPSMSDVAPDTKEHGIDLQARRKTYDDIT*
Ga0075432_100202123F081533GGAMPFTEATKITLEAGQAVELYAGVVLPPGSYSGIKAWVREDALGDLVSMPSRFRIELTAEQLVSMGAAVQPNQNWEEIDVTEFVRLGC*
Ga0075432_100202124F031559AGGAGGMSDSFINWTSRVAIAARIGERLRLRGWNELTLCGDYHAPFGKSEARAEAAKWLCLV*

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