NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105100_10288694

Scaffold Ga0105100_10288694


Overview

Basic Information
Taxon OID3300009166 Open in IMG/M
Scaffold IDGa0105100_10288694 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)984
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0991Long. (o)-99.1044Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034330Metagenome / Metatranscriptome175Y
F035656Metagenome / Metatranscriptome171Y
F099790Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0105100_102886941F099790AGGMDPEREDTARWLDEGRELLSMLHDEVDHLTQENQRLRAELGRLDELQAVIARVNRDADRLRAERDELLAGFRRMADLVEEIRRSRGAGR*
Ga0105100_102886942F035656N/AMGRLWIRRSGLVYDVMFAPTGNGEFRIKTEDGLRAFLWGASIPAERIEEAVAALRHDAEHEIPDVVLTLERMGKLGL*
Ga0105100_102886943F034330N/ATLLLAATVLFMWVIFAHPTPDERARLHDSMGSSTGIAWR*
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