NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211602_1030063

Scaffold Ga0211602_1030063


Overview

Basic Information
Taxon OID3300020285 Open in IMG/M
Scaffold IDGa0211602_1030063 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000460 (ERX555972-ERR599034)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)785
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2792Long. (o)26.382Alt. (m)Depth (m)850
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001625Metagenome / Metatranscriptome661Y
F064804Metagenome128Y
F089050Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0211602_10300631F089050N/AMVELNHNVVSFNSDTLIKGGHGVVVSVFVTKVGSGS
Ga0211602_10300632F001625N/AMALTISTSDWTSANVRKTLSFNAALVSKLRIYSIKVTFGASDAYATNGVSADLKEGRISTLVAVTPTFTDSKLVVQYDKTNEKIKCFTGSGNGNILAEVPNASALVNSKIFEFLVIGY
Ga0211602_10300633F064804N/AMVQLYHNEKLAKARDLVIIFLFGSIVIETITGIELLGAWWK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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