NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10002393

Scaffold Ga0213869_10002393


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10002393 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13003
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (93.10%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014373Metagenome / Metatranscriptome263N
F017557Metagenome / Metatranscriptome240Y
F095309Metagenome105N
F105152Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000239310F095309AGGMNYSEYRKKLRMLSAKYNEAYKRYGWGADTTRKLRQQKIDLRAKYAIHSFDYAVETLTSKGVL
Ga0213869_1000239317F105152AGGAGMGNDYCRIEDDSSYDYSDYDEGKGYYEPYKEKDEPDYDPIEQPEMAERLKEVKQRRGITD
Ga0213869_1000239319F014373AGGAMSRCKACDVILTEAELRKRDRVTDEHLDLCAVCQSASDEAIEENWATAEERDIIRSNN
Ga0213869_1000239328F017557AGGAGMKGQTHGGKGSAQRPAEDSKKFASNWDAIFNKTQQKPKDNKKELKK
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