NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10003909

Scaffold Ga0210394_10003909


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10003909 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17920
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (73.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002886Metagenome / Metatranscriptome523Y
F032375Metagenome / Metatranscriptome180Y
F059708Metagenome / Metatranscriptome133Y
F060217Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000390910F059708GAGGMDSIYDIFKVTSNGPLWIEAVPGLERAKEQMAYLVLTSPGEYFIHSQEHGVIAKQTQEFLEEIP
Ga0210394_1000390921F002886GGAGLPVAFRKISRVGSLTGATKWYLSEDCLLAAKRVMYVVEYRRFYLRDLESIVVWPNRTWLLRPIIPGALLATLGLSLSHWVNFTAGAIAGGAGLAWVALELGLGPTAKSRVRTTGATVDLPLVKRTRRAGKVLAKIDAAIRATRGSVMEQPTAPIDQPQPAASNQASPESAPAASPIGDLT
Ga0210394_100039095F060217GGAGMNDLNYTEQQTHSPEILNELNPQELLQRIHAAETAIFSRLQGMRITSIDLVEGQAIQDALDCLVRLTKETLEFADSLVEVTRIAGRSWA
Ga0210394_100039096F032375GAGMGELRYPEWQKTYHDALLELNPQKLVQRVNEAERAILSRLQEIRIGSDNRMEAQAIEDALNGLRVLKNETVKFKRSQNAGAHYDAIGAESD
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