NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1000435

Scaffold Ga0213920_1000435


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1000435 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33873
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (91.49%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010680Metagenome / Metatranscriptome300Y
F075600Metagenome / Metatranscriptome118Y
F076853Metagenome / Metatranscriptome117Y
F083897Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100043510F083897GAGMAKDIAYVKPDKGQEGDYRSLGPIRVCPCGSDTWNVKCKFDEDGTIGIYFLDMRCLLCDSLAVAPYEGQLNV
Ga0213920_100043511F075600N/AMEKITVGHKSFSQFSTWIRCGKAYQLERILEAPQSPAWWFVGGSAFHSAAEKFLLNEFEKKNG
Ga0213920_100043522F076853AGGMCKECGCNDNAIGGTPDNLTGKPTASPYGLYKGVGGTDK
Ga0213920_10004354F010680GAGMIVDLSQDEVRVCTNLAVERWLTKFGSVDRPNYAAGKAAGRLEHELLANVRANVSEWAVAKEYNLSWSVPWYPNGLHTRRKDIGDVGTYHEVRTVRTQKAIPFWNKDAGKYIFGTKILDEEYYSQVEVYGSFKSDEYMTEDYWDESINGWRVPVEEIIYV
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