NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000144

Scaffold Ga0212123_10000144


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000144 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)240780
Total Scaffold Genes208 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)159 (76.44%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034259Metagenome175Y
F061103Metagenome132N
F072594Metagenome / Metatranscriptome121Y
F073172Metagenome / Metatranscriptome120N
F095040Metagenome / Metatranscriptome105Y
F098797Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000144146F061103N/AMTRQGSLIYYLTAWICGCFFMSLAIWIRDLWGATATSSRSREAFGVLFFYFYGLVFGALAVLIAAFLLRRIMTRLKCKTPLHWAIAGAVLAPVLVGGLGEWGLRAGGEQRLEPRLLSFLLLGPVMALQAGWWLAIPAGAATGYLLCRVQRAFAPQQSEAPAANS
Ga0212123_10000144152F098797GAGGMDTFAEIHSVDRLTSAGMLFEKESEIHVNHHPPTLDDVQRRARRLHYEHGGVTGGYTLDDWLEAEHEIENTDGSGDENSQLH
Ga0212123_100001442F034259N/AMSKRVDFAKQRRDLGRSLSSAVREITAMVQPVAHQHGINLQVILDGASARKEEEKRLLTERLQESVVPLFIYRDGQPDRIGSCVLVRLDSEFYAFTAAHVIRDNGSAILFAPSEGRGGKLQPLPPCTAHLNSSGSANDLDVGVLALAARRLGAFQRHVFLASAEIDQEDQPDDQDDLRSFYFVLGYSASRTQVKISKAERRIHQQSFRFSTQPVDAAEYLQERMSKSDHILLDFDHNEIQVEGRRASPPKLQGVSGGGIFQISRRAMRGPLVAIATENRRRSRLIIGTRIKHFLAMVRLLRLLQPNR
Ga0212123_10000144202F095040AGGAGMYAYTCCRCTNCAAQIVLEEQGGSDTNLFRRPVRPRAGREACPYCRAVFVPETCYVAESETPLLQQAFAPLVKPEAAS
Ga0212123_1000014447F072594GGAGGVAARVCPDCLQVVPVGKVVAYSNDLVCPDCGKPLEISSPSRYLASFAGLIAAVIVWWAASKHYANDSWALAWVLPIVFSYFALSIVAPIVLALTADLELGTVEAVPIHTETAAHHPSH
Ga0212123_1000014473F073172GAGGMNSMQSSDLTETDIEPSDSAHEAALCENLTKARLQTITGFVKSLTTSTVNLLLAEKPFAREALQELVVKEAALRWIVRVATLSSGDVRARLWADIDEALDDLELIIDLVGRANIEWPVNVALEFSDDLAYIT
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