Scaffold Ga0209646

Basic Information
Taxon OID	3300025246 Open in IMG/M
Scaffold ID	Ga0209646_1000012 Open in IMG/M
Source Dataset Name	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025246 Open in IMG/M

Scaffold ID

Ga0209646_1000012 Open in IMG/M

Source Dataset Name

Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	573300
Total Scaffold Genes	523 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	353 (67.50%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

573300

Total Scaffold Genes

523 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

353 (67.50%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9082	Long. (^o)	-79.0499	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of North Carolina, USA

Coordinates

Lat. (^o)

35.9082

Long. (^o)

-79.0499

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023377	Metagenome / Metatranscriptome	210	Y
F031516	Metagenome / Metatranscriptome	182	Y
F044583	Metagenome / Metatranscriptome	154	Y
F050419	Metagenome / Metatranscriptome	145	Y
F051255	Metagenome / Metatranscriptome	144	Y
F076251	Metagenome / Metatranscriptome	118	Y
F095729	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209646_1000012103	F031516	N/A	MLHFDTAQMSAITQAHFFSRVAEFIRDQTTVAAYRQAAQDTSLRTALWAPHWPTLRDASEHDAALFMCFVLACATLGVDATRAAEAVRQTSQPETSMKLFLSERGLLRFSAFDVPDLTRPGAPA
Ga0209646_1000012146	F023377	GAGG	MTHRPVCPPRAIRMAMAALLLLAAAGVQAMTVSYQCTGRRLLTAELSPRKGQLHFEGHDWTVLRVPDKNMARYVSKKDDIEVITKERAMTFTHGGETLQCLLFSDALPGDAPRTLPKN
Ga0209646_1000012255	F095729	GGAGG	MTSTHSKETTVKTTLRQFALVSTLLATAAFPLLSHAQDVRREDRVLHFLDSGHIDANKDGMVSKKEFMDAMSKTWDMHMDDAKKADPMMHKDKMTLQQYLEFSKMFGLNVGS
Ga0209646_100001234	F076251	AGGA	MTTPPRSPFWRVLQLIAGIALFLYALRLLSPMPGDRAGFILLVAILAAGSMALTDSIIGLVVAGLDKMHKKGNE
Ga0209646_1000012400	F051255	GAGG	MHAATAIAPVTQQAANEWAHRQAARTMVRAAMNSDAVIYRRTWPTLEAIETLGEAEYDPTLKFDGFMDSTLDLRDGLSVVEVFAPINDCDGLQEFALLRAHR
Ga0209646_1000012443	F050419	GGAG	MTNASRPTFLRNFGRGAASSSRRPPDLADMGTAFALDEALESGSIDSIVPGDPSPPPVRATVRVAPWRLWLGRKLGA
Ga0209646_100001264	F044583	GGAGG	MDQLLTPNQEILRNRIRFALRRATGFVFDIDAMLRKPELRAKRIGLWRDVADHELSSLLDQLETEFQVDAADEEEAERTVVIRRPEAGATPR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209646_1000012

Overview

Ecosystem & Geography

Associated Families

Sequences