NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179593_1188339

Scaffold Ga0179593_1188339


Overview

Basic Information
Taxon OID3300026555 Open in IMG/M
Scaffold IDGa0179593_1188339 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2661
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057950Metagenome / Metatranscriptome135Y
F078351Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0179593_11883392F057950AGGAGMRVLSRWPGATLSVRMAKAKKTKPREHLIRWRASLITATPAKFIDFTMAPDAETAEEQVAEAHDISDELRPRLVAVREDLRQTVKSRG
Ga0179593_11883393F078351GAGGMTQYWIEQLSFSVEHFDETSGNLVEVLGRLHDLDAARAAYKECRRKYPAKVIYLCQGGRILRRSDRDNKSQDCSA

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