NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209419_1007961

Scaffold Ga0209419_1007961


Overview

Basic Information
Taxon OID3300027537 Open in IMG/M
Scaffold IDGa0209419_1007961 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1732
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000232Metagenome / Metatranscriptome1513Y
F052404Metagenome / Metatranscriptome142Y
F083762Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209419_10079613F052404GGAGMADGQSFLDNLKNLRLVLSVALEHVQANRNQFVKDATGTQVRHFERSITQIRILAEQLEREFNTLEYLIAKRPHNPVN
Ga0209419_10079614F000232N/AMKRPKQSDRVPPTPSALAVPSYHRILVKHGLIEKTLSIPDAYKVFMKVGADPEVQKLRRKVEHGSKIKHVPALYLATAMALQGMTKPELEALKLRIEKKAAIS
Ga0209419_10079615F083762N/ALFVSRGRYSGTLVTVGSYAITVLMSEKRMKGRWVVYERRNGEFIFLSRLFTTRALAEKERDKLEATFTYKKVSLGVGAIAKK
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