Scaffold Ga0307507_10002255

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307507_10002255

Scaffold Ga0307507_10002255

Overview

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10002255 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	41101
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F004318	Metagenome / Metatranscriptome	443	Y
F014479	Metagenome / Metatranscriptome	262	Y
F102221	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100022552	F004318	GGA	VLSKFRLSLVSYLVLSLILGIELVLDLSLGSLNILFIVEY
Ga0307507_100022553	F014479	N/A	VWLEGFWLLSSSIITVVEGVYIFLSVTSNCRCAKVFKLLVHLGIRAYSAVLPRGLYYCNLLLLEGPSCLNATAIHKVFVEFPFRLL
Ga0307507_100022554	F102221	AGTAG	VLKVVSPLFKAVNYSKQFLIMGIIPNFRSLEFSAIEYYRSLVELGSV
Ga0307507_100022555	F000247	AGG	VQTNIIYIVLSYKRTPRTEVARINCLAGSLNTFTDITPVPSSGIPFAYLSIDRKLYYNSGLSLNKSIDLTSTGL

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