NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000018

Scaffold Ga0326728_10000018


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000018 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)689602
Total Scaffold Genes590 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)384 (65.08%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003240Metagenome / Metatranscriptome498Y
F029408Metagenome / Metatranscriptome188Y
F038702Metagenome / Metatranscriptome165Y
F047734Metagenome / Metatranscriptome149Y
F061336Metagenome / Metatranscriptome132Y
F061997Metagenome / Metatranscriptome131Y
F064917Metagenome / Metatranscriptome128Y
F079473Metagenome / Metatranscriptome115Y
F092425Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000018101F003240N/AVLTDEDKQWIRELLEKVETTLLTEFHKWASPVELRQRSHAAALRALDAEVESLSDRLKNLEGR
Ga0326728_10000018218F047734N/AMTPRYVLAPVAAHDLVHIWRYIRKHTSIEMAERVEHVILDKIAFLASAPGGKI
Ga0326728_10000018279F029408AGGAMSSSIRQTRSFSLDPELLSEIDRTRGRASASERVNRLLRYALEMERKASLREEAAQFFASEPERRQERRAFQKAGIKSWRREG
Ga0326728_10000018290F064917GGAGLDSQKKSFWLLFSALSCGAFFLALGWGVVETLASLFVSWWVIYRSGIF
Ga0326728_10000018320F079473GAGGMKKLFTLLLILGIWILPATSHAADKSKASSSPIYVITNDDGTMHSYATFFVAGGTQNDPTLTFQQSVNTQGLGIGGGFFGTPRLTMLPNSSTQCLYVSDAGTGDVAAINLSSKTLVGNFSGSINDIGTSNGIGLAMNQNYLYAGYTLSNTIATFSVGAGCTLSFLGDITVTPLNGGWIAGMALNGNIMVVTYIDGSIESFNIANGIPIPNNDEQNSAGFAQTYFPDSVDITQDGHFAIFGDAAVPTIVEVSDLSSGKLAPTVMYLVSLPTNAIGPGVNSATARLSPDESLLYICNSQNGYVAAAFFNTSTGKVTPGCTSQLLNNFYNPWSYVGGLQTRDTTGTGNVLYVAEFGSSIGIVNVTSTGTACTLTEVAGSPVADNSSPGLLSIQVAPPRPF
Ga0326728_10000018335F092425AGGMPHLIFFLRLFAVAVAFPAIALYMVMATLVRFVFQDRHGWRTPLRIWMGVLDWAKGIPVGYSYWEQYEAPIMLDEIVVHHDE
Ga0326728_10000018484F061336AGGAGMFESETEYIVELQPRITQRLNELGFTSSRQASVLAHSLAEIASRSRTLDQQALPLFLSLDASRRRSLAELTVALKNHLDAMQDAITDLRAPLTELIDFLAREESQP
Ga0326728_10000018510F061997GGAGMKKSNHSKQPVPNRWLDVDEVRLVSDLRIMHSKVVELYQVITNLKRRHSESDIHKYADQPVLSEDIANVDEIYLWFVSLKEENNNKRAM
Ga0326728_1000001862F038702AGTAGVFSLGYVLIMAGLAFGGAVTVVGFGGLLVTSFHRRLGSPLPLPTLHSAFERRLYVLVGLSGLALWGSAFWWSLNFTP
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