NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10004738

Scaffold Ga0326728_10004738


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10004738 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39659
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (62.16%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001289Metagenome / Metatranscriptome730Y
F033558Metagenome177Y
F070364Metagenome123Y
F097850Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100047381F097850N/AGPRRRIELLAGWSAMAEQVSQRNVASAEVLFETALGLVYGGEMFHIQGFVVERLGGVAYLYRVAAMA
Ga0326728_1000473824F001289GAGGMKNPYDVLRMKEQELTRIRKEIDALRIAARLLGAEDPGATQGEAQPALSRVVEMP
Ga0326728_1000473835F070364N/AMNCLPTTNDYRPTTEKSYNRRVNAPASPKPAADNEHSDNKHKRHHAIYAAEATGLLLMAVLLLILTILRYWRYIPWSAR
Ga0326728_100047385F033558AGGMSENNSRPTPRVLLPLIEFIDRSLVAERKWTEAEFRCRDTALESQARADNLRHEAGDAKIQKASEVLDYRLEEMNNFRAQINQERAEYLRREMYEREHANLAERVKNLEIVRGEQSGRTAAYASMVGIVVVMVQIVLHFWK
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Institute for Fundamental Biomedical Research
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