NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0000037

Scaffold Ga0335020_0000037


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0000037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)109168
Total Scaffold Genes160 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)129 (80.62%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Associated Families14

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000671Metagenome / Metatranscriptome945Y
F001106Metagenome / Metatranscriptome776Y
F001125Metagenome / Metatranscriptome769Y
F002060Metagenome / Metatranscriptome597Y
F002387Metagenome / Metatranscriptome565Y
F002622Metagenome / Metatranscriptome542Y
F006846Metagenome / Metatranscriptome363Y
F008357Metagenome / Metatranscriptome334Y
F028166Metagenome / Metatranscriptome192Y
F078716Metagenome / Metatranscriptome116N
F088905Metagenome / Metatranscriptome109Y
F090386Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0000037_100737_100991F090386AGGCGGMAYSRFTDSDIYIYPHVSGYIECQACFLNEPTDEYTLLSMSEHILDDETLLMHILRHRIAGHNVPEGLEAEILSDPDRYGKLVD
Ga0335020_0000037_104124_104396F002387GAGGMSDPHGIIGYYRKGGGIMASFLEDVNQMVIDACYQDIAEQLLEDWINSNLDEGQYYADKQFAEMSGDEFIQSEFNKFYNLNEGDEDYFEA
Ga0335020_0000037_105569_105937F001125AGGCGGMGDRANFGFKDRKGDTIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICISQLINEEWPSETGWGINVNELGDNEHKVPIINWAAKTFTLMEEDLQTEVFSQSLDAFVSKYSSQPSMV
Ga0335020_0000037_45232_45639F001106AGGAGMSFETLKVAELRKIAEDFAVDTDGIKSKTDIVAALAEEGVTWSVYQKTIKDMEDATDEFNEDAEEILPRFNLDAQPEDTVLVRMTRENFRYDIIGFTFTKEHPFIAMTEENAQEIFDKEEGFRLATPKEVQEYYN
Ga0335020_0000037_81463_81999F000369N/AMSEIELSEHFDRMNRVVEELLKGSTPTQIAATTGIQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADQTGQLGIKSGALKLIADIETKRIAMLQSIGVLENNEIASQIAETERKQDILVRILKETTSTCPKCKMEVAKRLSQITGVIESVPVEEADVV
Ga0335020_0000037_83788_84036F000376AGGAMSTYQEKAKECKCCGKHVPLPTVLKEYSGIVLCPTTFSNVIEYKRIWKLAGHRPMGNIRKHFSEYVQQIVEETIDKNEDGTL
Ga0335020_0000037_84134_84454F002622AGGAGMTEDEANDERLAYYLEIGAVSFEGVDENGEIIYSISDSAKELAPELWQSHIDYVDKSLIELYEQGMVEIEYNEDLEATIHLTPEGHKVAKEKGLIEMDLNQDIPND
Ga0335020_0000037_92483_92719F000671AGGAMEKILCYCCNKSKNKLTVKKSSLLPINLFLCETCITAKFEPRWVIILSGRQLGPEAVKEFIVKKRYIGADIAASELFV
Ga0335020_0000037_92760_93074F002060N/AMEINYLSVVMAISAALVSGMGTALVAGFRDNKKERIRRSEREQDHLKLDLRDLKIELYKIEKELNEWKDKYYSAIQELIGIKAELEATMIELAHFEHHSDELDR
Ga0335020_0000037_9465_9812F008357AGGVAAQKNFEVDQNTTFSFVVEYTDNNDLPVNLSGATAKMQVRDTKGGSKLSFTLTSPFEGIVIDGPAGKVTCTMTPAQTSKLFHPKSSYDIMVTDTNNTKIKLLEGFLTLSRSVTV
Ga0335020_0000037_97527_97685F028166AGGAGMTNGNDLTGFNEVKGGDTNNLDLNPTGQAPASAFPSTDVSSQDGAGLGNGGK
Ga0335020_0000037_97688_97840F088905GGAGGMSENKDIDATPVVETVVAEEVKPVAEVKADPAPAADATDYWANAWANRGV
Ga0335020_0000037_97982_98182F078716N/AMSENGTGTPTAPISEPSGALTSREVPRKHPRQGSRSGIKIDQNKHGIRRETSLDPKPQKKGRPKKV
Ga0335020_0000037_98411_98728F006846N/AMESLHGKRIQMKMLTEFVERYLMRPKRLREAIEAVVHENDELLRILKQHEEDDTPTNLTWSEGDTWYGWTYNSNAKRYYFDDIGNTSLMGLWESQWAREAEAEAK
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