NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300006235

3300006235: Marine sediment microbial communities, 33.9 km from oil contamination, ambient, Gulf of Mexico ? BC463



Overview

Basic Information
IMG/M Taxon OID3300006235 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116840 | Gp0121740 | Ga0082395
Sample NameMarine sediment microbial communities, 33.9 km from oil contamination, ambient, Gulf of Mexico ? BC463
Sequencing StatusPermanent Draft
Sequencing CenterYale Center for Genome Analysis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size53400653
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationGulf of Mexico
CoordinatesLat. (o)28.3Long. (o)-88.2Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000344Metagenome / Metatranscriptome1257Y
F009040Metagenome / Metatranscriptome324Y
F021791Metagenome / Metatranscriptome217Y
F041277Metagenome / Metatranscriptome160Y
F047147Metagenome / Metatranscriptome150Y
F056191Metagenome / Metatranscriptome138Y
F082867Metagenome / Metatranscriptome113Y
F105419Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0082395_1011114Not Available696Open in IMG/M
Ga0082395_1011752Not Available1052Open in IMG/M
Ga0082395_1020776All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium828Open in IMG/M
Ga0082395_1021003Not Available715Open in IMG/M
Ga0082395_1023932Not Available705Open in IMG/M
Ga0082395_1024051Not Available630Open in IMG/M
Ga0082395_1026715Not Available1064Open in IMG/M
Ga0082395_1031190Not Available668Open in IMG/M
Ga0082395_1031965All Organisms → cellular organisms → Bacteria → Proteobacteria545Open in IMG/M
Ga0082395_1034737Not Available813Open in IMG/M
Ga0082395_1034739Not Available828Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0082395_1011114Ga0082395_10111141F047147IVAVTEGLVREEQLLHDMWLLGAMTMEITQILTRARKTWT*
Ga0082395_1011752Ga0082395_10117521F047147EGLVREEQLLHDMWLLGAVTVEITQILTRARNQPD*
Ga0082395_1014366Ga0082395_10143661F056191VCEARFRHALTAEMSEIFPSGGSMHASVKLEGIDGR
Ga0082395_1020776Ga0082395_10207761F105419MKKFFALSVFMIAAVTFTGLTNGCISNTKYGTDVTETLAPGASEGEVVMKHGAPDNIVYLGSPYFNPTTGERGEVDKYLYEYRIGGGTTLLGQLFADDRFHNIAYLIEGGRVMGGGYVNEGSGSIILGNDMGMIVTPLGAIDLRFGGFLHPKARAGYGGDGNP
Ga0082395_1021003Ga0082395_10210031F047147VTEGLVREEQLLHDLCLLGAMTVEITQILTRVRTKYI*
Ga0082395_1023932Ga0082395_10239321F000344MRPRHPHAAESGVGKHTARESESAQACAAGKERVANAHPQKLAPEP
Ga0082395_1024051Ga0082395_10240511F041277MRPETPLAVENSVGDLAAHVAPNASPGKRAWRTPTPHFGPRSDFG
Ga0082395_1026715Ga0082395_10267152F021791MLVRFYVDYRIKPHVPPFEQIPANFVKFQFCNNTTQVEYFTR*
Ga0082395_1031190Ga0082395_10311901F047147KGLVREEQLLYDLCLLGTVTVEITQILTRTGTTWT*
Ga0082395_1031965Ga0082395_10319652F009040DPKPLQAAVVKSDGGERCRKVGTKIPAGKAQRGERKRTADEVSKAD*
Ga0082395_1034737Ga0082395_10347371F082867RVVKPLTFTSNTLVLSVNPALTDLSNTLATIYRQYRVTELSFTFQASSDAGAYALAMQYVPQIGGTPSTLPTLLSEFEGPAVGYYETGRGREYTFRVPSDVLNAMGLNYYSTRTAVTPIQDPDILTQGLMVFLTSSPNIPVVAYMHVKYEFQTLEDPSFLASLFDDKKQDNDMLVVPRPGDVKGATWDENARGSIRGQSLGINHFSSVTQP*
Ga0082395_1034739Ga0082395_10347391F082867RVVKPLTFTSNTLVLSVNPALTDLSNTLATIYRQYRVTELSFTFQASSDAGAYALAMQYVPQIGGTPSTLPTLLSEFEGPAVGYYETGRGREYTFRVPSDVLNAMGLNYYSTRTAVTPIQDPDILTQGLMVFLTSSPNIPVVAYMHVKYEFQTLEDPSFLASLFDDKKQDNDMLVVPRPSLNSVGDVKGATGYENARGRIRGQSLGNNHFSSVTQP*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.