NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300024978

3300024978: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_1 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300024978 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118793 | Gp0095080 | Ga0209941
Sample NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_1 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size279004683
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Bioreactor Microbial Communities From Cape Town, South Africa
TypeEngineered
TaxonomyEngineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSouth Africa: Cape Town
CoordinatesLat. (o)-33.936637Long. (o)18.478905Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000135Metagenome / Metatranscriptome1961Y
F007832Metagenome / Metatranscriptome344Y
F025775Metagenome200Y
F069970Metagenome123Y
F074177Metagenome120Y
F082508Metagenome113N
F099558Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209941_1000365All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes62052Open in IMG/M
Ga0209941_1000907All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales26147Open in IMG/M
Ga0209941_1001706All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes14172Open in IMG/M
Ga0209941_1002259All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes11042Open in IMG/M
Ga0209941_1047645All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans972Open in IMG/M
Ga0209941_1074535All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales706Open in IMG/M
Ga0209941_1090409All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani617Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209941_1000365Ga0209941_100036553F074177MKNQSYQSKSALSLFFSHLAKNFIALFESGNKREFQRLKDFIAS
Ga0209941_1000907Ga0209941_10009079F007832VLFLADIFPGGGSPVADVFAIAIALFLFALLFWVIDLIDRI
Ga0209941_1001706Ga0209941_100170612F069970MTTHLTNAIKVGDRVIFDISWVEKFKAETSSSDKAVKQYQQLVLGGIDQAGVVKELGGNLTTVAYPDGWVLPVPTKYLIVLQSREDILMVI
Ga0209941_1002259Ga0209941_100225911F069970MNTLHPKQAIKTGDKVIFDTDKIEVFKAETGGPDEAIRQYRQLVLGGVDQIGIVKEFGNNLTTVSYPDGWDLPVPTKYLIVLPEES
Ga0209941_1003368Ga0209941_100336811F000135MWFQLRSPELAEEFEDLMAGDRDIVRGSLDTVSEWRLARPADVPGQAIGQADYVLIVEFVGIERFEQQASERVESLADDLDHLVSSRGMLVLRSVF
Ga0209941_1047645Ga0209941_10476452F025775MKQFLTFQGFPMVVVVALIVWSWISILSVVIGSLF
Ga0209941_1074535Ga0209941_10745351F099558MTLSNTAYSLVPSIARRDRSTAGRLLSAILSQWPERTRGSPPLPNYLRRDIGLEPLEPSRKYWDIR
Ga0209941_1090409Ga0209941_10904091F082508GSALASSQSAERIEQTASMSSGSPRVRPLPRPGSRPHNPSVTAAPAPEVDTDEQLALVSQDHLRSLHQPLKYGFADRSTARKGLEVAAGVAIADRLGSIRQTAGPPIGRHGYMAIVWLGSRWLQLEQPTATAIPFSQYRMLHDFGWHESGRNARQALKRTLLNLQEARWEGDVNDSATGRKTHEDHFGIIDRVLWPVVNDGRTER
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