Sample 3300025979

Overview

Basic Information
IMG/M Taxon OID	3300025979 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101389 \| Ga0210078
Sample Name	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	101222574
Sequencing Scaffolds	70
Novel Protein Genes	73
Associated Families	71

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	12
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1
Not Available	23
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → unclassified Candidatus Nitrosotenuis → Candidatus Nitrosotenuis sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.000706	Long. (^o)	-121.624306	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003001	Metagenome / Metatranscriptome	514	Y
F003187	Metagenome / Metatranscriptome	502	Y
F003485	Metagenome / Metatranscriptome	484	Y
F003771	Metagenome / Metatranscriptome	469	Y
F004397	Metagenome / Metatranscriptome	440	Y
F005099	Metagenome / Metatranscriptome	412	Y
F005492	Metagenome / Metatranscriptome	399	Y
F006263	Metagenome / Metatranscriptome	377	Y
F006533	Metagenome / Metatranscriptome	371	Y
F007146	Metagenome / Metatranscriptome	357	Y
F007886	Metagenome / Metatranscriptome	343	Y
F008521	Metagenome / Metatranscriptome	332	Y
F008634	Metagenome / Metatranscriptome	330	Y
F010497	Metagenome / Metatranscriptome	303	Y
F010961	Metagenome / Metatranscriptome	297	Y
F012904	Metagenome / Metatranscriptome	276	Y
F013244	Metagenome / Metatranscriptome	273	Y
F014273	Metagenome / Metatranscriptome	264	Y
F014308	Metagenome / Metatranscriptome	264	Y
F016687	Metagenome / Metatranscriptome	245	Y
F018801	Metagenome / Metatranscriptome	233	Y
F019677	Metagenome / Metatranscriptome	228	Y
F020248	Metagenome / Metatranscriptome	225	Y
F021743	Metagenome / Metatranscriptome	217	Y
F023728	Metagenome / Metatranscriptome	209	Y
F026037	Metagenome / Metatranscriptome	199	Y
F026671	Metagenome / Metatranscriptome	197	Y
F029036	Metagenome	189	N
F029148	Metagenome	189	Y
F030144	Metagenome / Metatranscriptome	186	Y
F030840	Metagenome	184	Y
F031547	Metagenome / Metatranscriptome	182	Y
F031967	Metagenome / Metatranscriptome	181	Y
F032873	Metagenome	179	Y
F034003	Metagenome	176	Y
F034233	Metagenome / Metatranscriptome	175	Y
F035063	Metagenome / Metatranscriptome	173	Y
F037023	Metagenome / Metatranscriptome	168	Y
F037274	Metagenome / Metatranscriptome	168	Y
F042409	Metagenome / Metatranscriptome	158	Y
F047852	Metagenome / Metatranscriptome	149	Y
F048394	Metagenome / Metatranscriptome	148	Y
F048456	Metagenome	148	N
F049733	Metagenome / Metatranscriptome	146	Y
F052029	Metagenome	143	Y
F053322	Metagenome / Metatranscriptome	141	N
F054151	Metagenome / Metatranscriptome	140	N
F055511	Metagenome	138	Y
F056714	Metagenome	137	Y
F063102	Metagenome	130	Y
F063546	Metagenome	129	Y
F068992	Metagenome / Metatranscriptome	124	Y
F069483	Metagenome / Metatranscriptome	124	Y
F071375	Metagenome	122	Y
F076659	Metagenome	118	Y
F077734	Metagenome	117	Y
F078867	Metagenome / Metatranscriptome	116	Y
F080961	Metagenome / Metatranscriptome	114	Y
F084894	Metagenome	112	Y
F086262	Metagenome	111	N
F086771	Metagenome	110	Y
F088953	Metagenome / Metatranscriptome	109	N
F089963	Metagenome	108	N
F090825	Metagenome / Metatranscriptome	108	Y
F091213	Metagenome / Metatranscriptome	107	Y
F094880	Metagenome / Metatranscriptome	105	Y
F097890	Metagenome / Metatranscriptome	104	N
F098592	Metagenome	103	Y
F099806	Metagenome / Metatranscriptome	103	Y
F104362	Metagenome / Metatranscriptome	100	Y
F105451	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210078_1000641	All Organisms → cellular organisms → Bacteria	3092	Open in IMG/M
Ga0210078_1001008	All Organisms → cellular organisms → Bacteria	2700	Open in IMG/M
Ga0210078_1001474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2378	Open in IMG/M
Ga0210078_1001562	All Organisms → cellular organisms → Bacteria → Proteobacteria	2335	Open in IMG/M
Ga0210078_1002246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	2059	Open in IMG/M
Ga0210078_1003230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1800	Open in IMG/M
Ga0210078_1003764	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
Ga0210078_1003816	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	1689	Open in IMG/M
Ga0210078_1003824	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1688	Open in IMG/M
Ga0210078_1004147	Not Available	1635	Open in IMG/M
Ga0210078_1005466	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
Ga0210078_1005671	All Organisms → cellular organisms → Bacteria → Proteobacteria	1448	Open in IMG/M
Ga0210078_1006222	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
Ga0210078_1006310	All Organisms → cellular organisms → Bacteria → Proteobacteria	1395	Open in IMG/M
Ga0210078_1006571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1373	Open in IMG/M
Ga0210078_1007201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1326	Open in IMG/M
Ga0210078_1007247	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1321	Open in IMG/M
Ga0210078_1008074	Not Available	1263	Open in IMG/M
Ga0210078_1008748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1222	Open in IMG/M
Ga0210078_1009871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1166	Open in IMG/M
Ga0210078_1010448	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
Ga0210078_1010782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1125	Open in IMG/M
Ga0210078_1010955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1117	Open in IMG/M
Ga0210078_1012144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1071	Open in IMG/M
Ga0210078_1012161	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
Ga0210078_1012935	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1042	Open in IMG/M
Ga0210078_1013124	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1036	Open in IMG/M
Ga0210078_1013451	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1025	Open in IMG/M
Ga0210078_1014710	Not Available	986	Open in IMG/M
Ga0210078_1016120	Not Available	948	Open in IMG/M
Ga0210078_1019036	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
Ga0210078_1019348	Not Available	879	Open in IMG/M
Ga0210078_1019568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	875	Open in IMG/M
Ga0210078_1019646	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	873	Open in IMG/M
Ga0210078_1020628	Not Available	854	Open in IMG/M
Ga0210078_1021712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	835	Open in IMG/M
Ga0210078_1022986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	814	Open in IMG/M
Ga0210078_1023380	Not Available	808	Open in IMG/M
Ga0210078_1024720	Not Available	789	Open in IMG/M
Ga0210078_1025253	Not Available	781	Open in IMG/M
Ga0210078_1028180	All Organisms → cellular organisms → Bacteria → Terrabacteria group	745	Open in IMG/M
Ga0210078_1028251	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	744	Open in IMG/M
Ga0210078_1029348	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	732	Open in IMG/M
Ga0210078_1029563	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
Ga0210078_1029669	Not Available	728	Open in IMG/M
Ga0210078_1032631	Not Available	700	Open in IMG/M
Ga0210078_1033617	Not Available	690	Open in IMG/M
Ga0210078_1034766	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
Ga0210078_1035863	Not Available	670	Open in IMG/M
Ga0210078_1036744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	663	Open in IMG/M
Ga0210078_1037751	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	655	Open in IMG/M
Ga0210078_1038354	Not Available	650	Open in IMG/M
Ga0210078_1038570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	648	Open in IMG/M
Ga0210078_1041935	Not Available	624	Open in IMG/M
Ga0210078_1044013	Not Available	610	Open in IMG/M
Ga0210078_1044914	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
Ga0210078_1046160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	597	Open in IMG/M
Ga0210078_1046856	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
Ga0210078_1047730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
Ga0210078_1051097	Not Available	569	Open in IMG/M
Ga0210078_1053336	Not Available	557	Open in IMG/M
Ga0210078_1053511	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	557	Open in IMG/M
Ga0210078_1056820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	541	Open in IMG/M
Ga0210078_1056980	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	540	Open in IMG/M
Ga0210078_1058938	Not Available	530	Open in IMG/M
Ga0210078_1059140	Not Available	530	Open in IMG/M
Ga0210078_1061321	Not Available	520	Open in IMG/M
Ga0210078_1062076	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → unclassified Candidatus Nitrosotenuis → Candidatus Nitrosotenuis sp.	517	Open in IMG/M
Ga0210078_1062291	Not Available	516	Open in IMG/M
Ga0210078_1063334	Not Available	512	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210078_1000641	Ga0210078_10006412	F048394	MNGPLLISLLPPEQIGEAAKAPPDQVTYVIAVLLLAGILLSRWLRPPKQ
Ga0210078_1001008	Ga0210078_10010083	F032873	LRAKIGDDAKDGAGHIANMAKPADKVSNDFGRNPGEGI
Ga0210078_1001474	Ga0210078_10014742	F026671	MRKGYRREARSEGSAEQTCELMDKNRIQGASVGRAGNVLRSPYPSRTRGVDPATVHGRRLNLPREICSVSLRRLGPPRDGLTAGQKSAEGVIGHVVGKASEALQDPKVEQTDRPSRKRGLKA
Ga0210078_1001562	Ga0210078_10015621	F031967	GKRFIVRSAPRPAASLALRAAGVALPPTVRDAASH
Ga0210078_1002246	Ga0210078_10022462	F012904	MIDRGQRSNNRVTALVLASIALAFFIGIMLKYVLIK
Ga0210078_1003230	Ga0210078_10032303	F020248	MKFRATSHAFVAAAALLVAPYATSSAQAFTIEDQGGTRSGQAFMDLDKPAAAPDRLAPVSPFNTDNGQTTIKQGNSTFQFGQQRSFDQRYNTDNMFNPYTREGR
Ga0210078_1003764	Ga0210078_10037643	F069483	LEKSWRTPSERIRTASEIPIEVELRDEDAIPIFMRISDKVLHLRRLGMTYTNIAERRGINPWMAKKAAQWGNIQQA
Ga0210078_1003816	Ga0210078_10038162	F030144	MFRRKTEDLTKHPKSAPELPENKCISAFFSPAPLDDNQPSLIHFSSTPLFRLEKCPEKYAHLLKKKDVEHICPIVNYFISKSGHIVYLGGDVVKNLYLHGRKNYNVLNLLAILTSQDVDKYSSIMNSIISSNDGAFSMGFKYRVRKNRSDGCFKDIALARYIIEPRLEGPEKLLYPFRSSTIELDLTSQHRFYHAFGLEVK
Ga0210078_1003824	Ga0210078_10038242	F088953	MDTSTQAQKRQRATTFPSARGAAPTCGLLEVQWDSPFDRLCFLVSAPDLALKNSRRYTTLLAELIAGSGCTEEEILAHGHKVRAYLFFAQDRLSKDGQLDGLTGKEKWTYRLPAVAPAF
Ga0210078_1004147	Ga0210078_10041473	F037023	MTYFVEGVSKHGDPQPEVRRVGEYQTVAEAVAVAQNAIEQFLRGEFKRGMDATKLFSLYEERGEHMFIFQDEAKTFNVAGFDHTEYARTRAAEICGGVK
Ga0210078_1005466	Ga0210078_10054662	F014273	MLEEFRRWIHRHFNVVLSFVLGITFGISILAFAYFSTRNDVAAEALRYGVQITGHSDIDEDLVWLFCGTVIGVSVTCLAWWRDSKAQSVDLEKADVLNRLFTDPPPSVVRMPEKSRQDAD
Ga0210078_1005671	Ga0210078_10056712	F013244	MKKLVSAIVALGLAVAFTAPTLAADVTAAKTKGACTKAGGMWDATAKACKPKS
Ga0210078_1006222	Ga0210078_10062222	F034233	VGRKTILILAVGAFVGALTGGAMAEILAGSAKSEQVLLAAVAQEFVPEGNWAGTDWQTRGPVETGAIPGIVLEESWMKEYGND
Ga0210078_1006310	Ga0210078_10063103	F021743	MDMSLSDPVMAALIGASATVLAALVQLRLSWRNELKERERGQPITKKTRRGPVIVVFALMIAAAVGGFALSEYFMSLRDGDRDTLRAELQSKLSEISASAARLERARLAERDQVEFGMLRAEALRRGE
Ga0210078_1006571	Ga0210078_10065712	F003187	MKKFLVVLCSVFLAFGLTACVGKGKAPVGKGKAPVIQTKG
Ga0210078_1006571	Ga0210078_10065713	F005099	GAYEETMKPQVATFLQVGAFIAIVAVLATPALAYWQFIERPPGVEVKPSPRYGTKKDCEVALKKVEAALKKAYPDRYPLVGSCEEYR
Ga0210078_1007201	Ga0210078_10072011	F094880	LEKGAIKIDTLTAGTAVHVCPREGDVLLAIGEPGAEGSRTAAMSPEQAEMALHALGLAVARIREEARLKREERAGLEERLLEQEVRLRGS
Ga0210078_1007247	Ga0210078_10072472	F007886	VEGGDAVVAVFEVLEVVLAGVLAGGDTAAEAGVEGAVDVVCSDVLGADSFLSPVGGAGASLPGDGFSLSE
Ga0210078_1008074	Ga0210078_10080742	F063546	MSDWTFGDVQARNMEIVALCEQEGCRHLFSFDLDQLIEGAGADYTVADIPPMTCPTCGAGLLAIRLSFAEPPPEGEG
Ga0210078_1008748	Ga0210078_10087483	F035063	MRVAATLAPLCVGMPFHPLSVNAQVIDFSQIDAFESMGTGTQRGTSPPKTIVDDGERHTVFITILESNTEAKIYWKSADSGQPQTTIMRGPGVQAFQTAGEFRIEALGDENHSVKYGYVLLRLKRQ
Ga0210078_1009871	Ga0210078_10098712	F023728	MNSEDLPRPMVLSLASVGADEERYLRSVLALLKSYLEPQWCLATRLGDLPDAVLVDMDGPEGRQVWENVDFGDIPRIALARDQVLGAEWTLLKPMRTGGPHSVTEVLQAVAGKLQISDPARDSPARKKHTFAALVRKAYHKTYPADVVFATGSVLVVDAAKQVYYSSRTTDELIALLRNRRRLDARVIPVVSPDKLPARLARWGIKPRPLEELLW
Ga0210078_1010448	Ga0210078_10104482	F019677	MISYSVHEASRILGIEKSRVRDWIVKGFIIPSWHKAMARGDKNLLTYDDLCYVYLFQQLLSMRLRRTSISFIISEIGKAGLSDNLKSNFRYVIWDTKNPKEGGNIAISTQIPTSMIETLIVGDRRAAPRGSRQMLVIDLLEITREVDHKRKKRGG
Ga0210078_1010782	Ga0210078_10107821	F003771	FDGLYLPPPSRPDKPLTVKTLIVPTSEYADGRNVILTTGRSVYTVSLRHLVEQRADWSWAAIQIIQKRPRERYTARPAESS
Ga0210078_1010955	Ga0210078_10109552	F004397	MSICAIGAAIRGGKAAMAEFDLKVALIIFVTKLIDPFAALPALVAGYFCRTWWQVVISAAAVGIFVEMVLVLFEPTPGIHQGRLLMAVLAAGVWSNLAFAFKTWRAKRA
Ga0210078_1012144	Ga0210078_10121441	F003485	RDLHVEVQGDDIVVTLPGTSYVVRYYRATAFPQQLLTKSHSGREDQGAPMTQAEFHTRAWKAANAKARELGWIV
Ga0210078_1012161	Ga0210078_10121612	F003001	MIRTAIITVTASFVLFAAWTVNLVSYHPANDLNPLAPLSV
Ga0210078_1012935	Ga0210078_10129351	F098592	MNFANIRRGVAGIVLMLAAVGLGLPPVDAAEKESKALATRVTAIDFNECEPFQVRAQIMDLHPQNGTIVVAEREIRALDVSAGGKPIKTEFLTMDGKPESPSAFSAGQYVWVKGVLHPDGFVAAFVVQKIAKPPEAKFIYKPLADNQAKARKAGRRPVAPAAGN
Ga0210078_1013124	Ga0210078_10131242	F056714	MKQSVIFLLILTLAGPIAVFAATLENTDSQEYEFQIQESGRPYGSQYRIIENAQVEICFSGCVMTLVATGQTVRVGPNDAVVIDNGVMSVTAGN
Ga0210078_1013451	Ga0210078_10134511	F018801	LGVFLKPYTLENSRCINISFLRSQPSCFAQDSQIPEIIKYGSVAIGFALLYAGRMQIKRQREK
Ga0210078_1014710	Ga0210078_10147102	F006263	ERRMGTGWQLLEGVATLLVSIALTYWLFVAPPRVKREQRQKARDLRDPRDR
Ga0210078_1016120	Ga0210078_10161201	F029148	MSAEGWNEVTIEWRGKTVKGTYCVSDRLITVAAWTGTKTAQLGILPAERLAKMLLRELAFEEGDKKL
Ga0210078_1019036	Ga0210078_10190362	F053322	VARLTLRGLARTLVVRLIGIVAFTGALGIGLSWLLEMAVSEPEWTETAAIAQRAVNRSGLPELLAGQNARSPKRWAEESARFVRELPGVVSIKVWDPQGTVVWAVQAGLIGQRSDGHELRDAVNGRVAVRFSSMAPPNAEAQGFVSPNVADLFVPVYGPGAARVVGVVELSQAPLRMDQAHERWSVLAWNIALGTGG
Ga0210078_1019348	Ga0210078_10193483	F003001	GMIRTAIVSVIGSFLLVGAWTANLVSYHPTADLDPLAPLSVHID
Ga0210078_1019568	Ga0210078_10195682	F014308	MSGSTISIKLIMSKTGTSPKATPEQQASGREVAPQPVVKAPPPLGMGEIVDKVA
Ga0210078_1019646	Ga0210078_10196461	F016687	PSRGGEMKAPKYIVGLITISMIALCAGSVSAWDTRWQFKQEAPSNNCGSGTRGIEMQKKFDYNSMNTFKGTTDSSNGYTVMRNLNGNTMRGYIDKDGAGLLRDHNGNFHSVNTRW
Ga0210078_1020628	Ga0210078_10206282	F042409	MGKLPFPVPPHPRRIRILILCTLVPLLFSSCGGGNAAQRKSSNEWLNSKIGIATLDDLISNMGPPQQSIETPEGIWYTWRKVNPGTVSGGVSMGFFGIGMTAPAETGEELNCLFDRNTGRMRNFNYRDW
Ga0210078_1021712	Ga0210078_10217122	F010497	MSWITWVAVLVAWPLLGLGVAYLFGRIVDGGEELESPGDLAPPAVSYLRRVKRAKTPSRAITHSKTRRVAGGGRHH
Ga0210078_1022986	Ga0210078_10229862	F063102	ALLEAQDTDSVQKQIAYGFAGDVGTTPPMDHRIDETGISVPICFNDSREGQPCR
Ga0210078_1023380	Ga0210078_10233802	F008634	MYGKGRELEIGNATSAIVISLLRALVGKGVLSNSEARAVLTKAAAALGPHDYTAPVKGAIGIILDDVLPKFPENGGD
Ga0210078_1024720	Ga0210078_10247201	F091213	MGRAVQILICNEDAPRRETRGIGRETLGIQSVGLSTPREKLRSGVGQNELAVDQVLANFVAELFVILHPATLPMLERMFEDVKQDAETDGEWGLKRRAEIGIAAARIAAREQEAIET
Ga0210078_1025253	Ga0210078_10252531	F068992	NVFGTHRPFVRWPRGLALTMLDAVPAAKRAFTHAMLFGLR
Ga0210078_1028180	Ga0210078_10281802	F052029	LPADPVAQQAANNTGALSEQFVTIGAASLALLIVAAIAVLMGMA
Ga0210078_1028251	Ga0210078_10282511	F105451	VRERLFVGLGLVGAAMVFSTIAVGRSGSKSIPCPVCGRIDDLALVDPIGTHLFKAVLWNCQCGNTRAVLINRYTPRVLIEKA
Ga0210078_1029348	Ga0210078_10293481	F078867	MFVENLAQTKMWGFWQYMFDLCNEDFSCVLGSLTAILLVFLAVVLGLGAMVTRLNNRRG
Ga0210078_1029563	Ga0210078_10295632	F008521	MNTKNQRPNLRSEKDQSASFLIWIISGLYLLVMVWLLLSTTGKYGTHEPQPWLASAVTGFTVAYGILMLW
Ga0210078_1029669	Ga0210078_10296692	F003001	MIRTAIISVIASFVLVGAWTANLVSYHPATDLDPLTPISVDWK
Ga0210078_1032631	Ga0210078_10326311	F084894	VTNKFGEEIMRAPIIAAVLAVVGGLFLIISAFLGVTPFADWTMLGAETCLVLAAVIFLGWFFAGCVEEIRNA
Ga0210078_1033617	Ga0210078_10336171	F030840	DARAKVAPKLPVADWIALIRKLRDEGKTEEAAKELAAFRTAHADHERLLPPDLRDWHPAA
Ga0210078_1034766	Ga0210078_10347662	F071375	MENNVVSLPDVGKISELITALRDYAVKSAREQWAQNMSSVYLPPRLRCWDECAWFELAKDWEVVNYLLSDTTRARVLMRSLHFCLQWYGQNEIDRLQCMKIL
Ga0210078_1035863	Ga0210078_10358631	F048456	MRWYVTSKKSNDTRDGRSLDTAFRRILHAIHLARPDDTIVIVPGVYDQDFDKRVVTARAAGVKVAVIGS
Ga0210078_1036744	Ga0210078_10367442	F099806	SGALAWTGIVDTKENDDLGAALTQYINMIFDAMVSDRVL
Ga0210078_1037751	Ga0210078_10377512	F089963	EAALWPLFGALHLRDLDPGLERKTRELLSRTIERISDGAGERIERLLEAGDRDGAMQRWQDVRGIIQEARDQGLSHEELASAFGRARQVLERIEAAKG
Ga0210078_1038354	Ga0210078_10383542	F080961	MKRKPIRLIEQIVTYLPLAGVLGVSMLNLSTFQHQLLMLFLLVWANTFFLYKSWMSQ
Ga0210078_1038570	Ga0210078_10385702	F010961	YVARHETAQQRVSAMMAYVVSEGRLFALKPSEWSMLLAGVAICGVATLLF
Ga0210078_1038696	Ga0210078_10386961	F104362	ASAAREYLEKYPASPLSAVIGVRLGHEALLAGDTAAAISRYRAASDAGNPDASAVARYMLAWGRFQSGDAGGALRELSQPLSDPSFPCGIPSPFEREVVSLSVRAWRESPLERLDAYPPVNAGTCGGKVLLAALWEAEEKRGEVSRAAVVRDVAARRFPSDANAAALEMETVESLLRVGREREALDRALTLRGKYGPDSAWAQSQPAPVGEKTAKE
Ga0210078_1038886	Ga0210078_10388861	F049733	MKCSRPALLFFALFVIVASVSGCLLGTQLTTQTADPKTITGTYDLLLYGCRYPTDLEHAAFLIVPDKTDSVELFVPQSSYEIKRGLPADTALAEAGTFVRCGTHTVTEIRVHRIPDGSSGTIGYEILPRYLPDDVGGADPLFVSYTLKDGKITVYIRLFPEVEKITNFQGNPES
Ga0210078_1041935	Ga0210078_10419351	F037274	AINCNRDGVNKKIYTVYRIGYWNNKLELIGKVVERRKEERNNNAADMLRWAQKIYAASSIDSSIFIVKEGSSEGAIFGGA
Ga0210078_1044013	Ga0210078_10440132	F031547	MSVAYLPISKEGGDMRTYTVYHVDYLKNKTVKIGKLLDRREGERFNNAEDMLRLAKIKYPTSSNNSHIFILRESSNQNILLGDV
Ga0210078_1044914	Ga0210078_10449142	F034003	MKKRRKTNSALIKSNQLSFDFTNNIPIEIHTPKSNISELRKELAWEHRPIIEIVKS
Ga0210078_1046160	Ga0210078_10461601	F006533	MSSPSVSYAESVLSHLEKVQELPGEVQVNIARRVDSYIKIARAAKEETIVATVASTAMEDQAKAIGQGGDTMDPRWAAPAIAEAWCYATISLSKGYLDRLHAEAIIAAIETFTTSRL
Ga0210078_1046856	Ga0210078_10468562	F047852	MAEASDKATRRIRRAAAVGGLGLLVQLVAALHWTPVTFILSAAIGAPLVLVGGGLFLRAVWKNMREKGAV
Ga0210078_1047730	Ga0210078_10477301	F054151	MQLAECKFPSGNSPDMRKADQYALADHFRALADGLSVRAVTERAPAQRAELQRLADCYAELAKQQSPADSQRW
Ga0210078_1051097	Ga0210078_10510971	F090825	MKVAALAALSVLVALPAEAGQRQRQNGSPATTCDNDGHCTTQGATAPITSYRNSRSETQRTTATKHQSHALDANGNKTVGVIISLKTGAQACVGISYAARFQAYIDDLETNHGARVLFMGGIRPGRCSSSSEHPCGKALDVCQRRRVAVDPRCNLPGRVALGQI
Ga0210078_1053336	Ga0210078_10533361	F029036	GRLPSKFYVHAGDRVSAKETRGMGYTVRAGERIKVWDNKRYRSLPVTNFSVILPISVPEAPESPVFEEDRALVETLTNSDQVAELADEFAVFQGETKNALTAVVSVVAVIGVLLLFINLVLIIK
Ga0210078_1053511	Ga0210078_10535111	F086771	QPDQIRRMLKAMTQALKYIQDNPEGTQQVMISWLKIDREMAADIYQMARNNHTKDGMVEEATLNSLVTAMLAEAGIKGVNVSQLVDFSLLQQALK
Ga0210078_1056820	Ga0210078_10568201	F007146	VNDVLKWMAMVSAIGILLMIVEYRFAKKKKEGFTAVDRKRIVGILWLTIFFALLVGG
Ga0210078_1056980	Ga0210078_10569802	F055511	TTIDDAFMSEMRAHFTDAELVELGLITGAFIMLGRLHRTFGVAPMGPRSHAVLERGYDP
Ga0210078_1058938	Ga0210078_10589381	F097890	DVIDSTSILLKRLENKDLAIEPTRKVPVLGDKAQKKGGAKGAKLSLTDPDGRDTSGGFDPYNSRR
Ga0210078_1059140	Ga0210078_10591401	F077734	MDTPISAASAKKLLESDMAEEICKSLEQTILKYFPQIETNVDRPKSSSVPLVPHRQK
Ga0210078_1061321	Ga0210078_10613212	F076659	QHESLSAGQAEGFVSAVRFVCRPGERIFGEYSLGPFAAALGPCVLAANLADTNPHRWKVHESTPQDWVAALERDHLDIAIVARGDSMLREPVVREYITSTFPRTVATWDDPYAGHVELRRRAAK
Ga0210078_1062076	Ga0210078_10620761	F086262	SKLEAQCQMCRQKINIGDEIVRMASGIWIHEYCQEKTPEQTNSQDNLQDYNKKLLESKADRLKSLKCIYCGNGSFMKSKLETAALDDGTIITKKLYPCYTCGHIMEFIENLSS
Ga0210078_1062291	Ga0210078_10622911	F005492	MKVTALAALCVIIALPAEAGQRHRQNSVSPSCDNDGRCATVSAAAPTSNHKRTSERKPHRVVDANGNSLIVTVQTAYGFNITVHPAYASKFQKFFALL
Ga0210078_1063334	Ga0210078_10633342	F026037	MEEKVDKVGQLLHADMKVDRQLERLDDVKTLTEIIHHYREKRARSSEIALAIVKYVKEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025979: Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences