NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10000004

Scaffold Ga0209229_10000004


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10000004 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91329
Total Scaffold Genes146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)115 (78.77%)
Novel Protein Genes37 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)26 (70.27%)
Associated Families37

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001176Metagenome / Metatranscriptome756Y
F001229Metagenome / Metatranscriptome741Y
F001280Metagenome / Metatranscriptome732Y
F001464Metagenome / Metatranscriptome689Y
F001900Metagenome / Metatranscriptome620Y
F002489Metagenome / Metatranscriptome554Y
F002598Metagenome / Metatranscriptome544Y
F003582Metagenome / Metatranscriptome478Y
F003663Metagenome / Metatranscriptome474Y
F004006Metagenome / Metatranscriptome457Y
F005000Metagenome / Metatranscriptome415Y
F005053Metagenome / Metatranscriptome413Y
F005054Metagenome / Metatranscriptome413Y
F005479Metagenome / Metatranscriptome399Y
F007363Metagenome / Metatranscriptome352Y
F008357Metagenome / Metatranscriptome334Y
F010248Metagenome / Metatranscriptome306Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y
F017101Metagenome / Metatranscriptome242Y
F017134Metagenome / Metatranscriptome242Y
F021111Metagenome / Metatranscriptome220Y
F021757Metagenome217Y
F025747Metagenome / Metatranscriptome200Y
F033808Metagenome / Metatranscriptome176Y
F035764Metagenome / Metatranscriptome171Y
F039131Metagenome / Metatranscriptome164Y
F044483Metagenome / Metatranscriptome154Y
F061853Metagenome / Metatranscriptome131Y
F071173Metagenome122N
F074868Metagenome / Metatranscriptome119Y
F103145Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_10000004101F000369GAGMSEIELADHFDRMNIVVSELLKGNNPTQIATLTGFKRAEVVELIDEWKSVVHNDTAARDRAKEAISGADQHYAMLIKEAWKTVEDADQAGQLSVKSGALKLIADIEGKRIGMLQEVGLLDNAELADQIAETERKQDILVKILKEVTASCSKCKMDVAKRLSQITGIVEPVVLSEEEANVL
Ga0209229_10000004104F000376GGAMSIYQEKAKECKCCGKHVPLPTVLKEYNGVSVCPTTFANVIEYKRMWKSLGKRPSGSIRKHFSDYVQQLVEETIDKNEDGTLQ
Ga0209229_1000000411F017134GGAGMNTFIVACLNHEICGATETFYSEEEYEIYGDDYMCGECYDSEEMEFYELTGWADSDALASAGFGMDEDY
Ga0209229_10000004117F003582GGAMNTYKIKLEVDAEVEAFSSDDAVDYANDIFGVDDEVKNVKVVSVKEK
Ga0209229_10000004119F013878AGGAMLNLTELGVEVFIKKAKNITPYWDNYDLIIWKKDNSGFTNIKGMFRENAWGTAERIAVNDNGIWKLPAKYVRNFK
Ga0209229_10000004121F000473AGGMFIDKSNDKLKEHFKYGINQWTGEPNKPVFYTEEMKKAVHQVKKPSMLLMDIVMYPDFLALRLYEDNFLQFEGTKKEMVIDYVTKVKRLIESYGVRCELEGKPSERVL
Ga0209229_10000004122F011938GGAGGVREYYDTTHIVFIHSEQCYGTVEKLGAWASIVKYDNDGIEYNELMENEEFTIVDEIVFKHVEESN
Ga0209229_10000004123F000671GAGGMEKILCYSCNKSKNKLDVKRSSLLPINLLVCESCSSAKLEPRWVVILAGRSNGPDHVRDFIVKRKYLGNEITASELLI
Ga0209229_10000004127F010248GAGVRKSDRIRLLEMEMLRMQFQIEYLNTAVRLLLDEAKVTGPEMDAGKWYNAKLNKDK
Ga0209229_10000004129F017101AGGAGMESNEKRMSILESIIQDVARALFQKWANGLPEENRSEEALANLNKNAIDSTYFVVKMFMDQFNAAADELKAQPDEQ
Ga0209229_10000004134F039131N/AMAQDEVYELEGYFERKYKKQIMDQINNFEFPNEWTPKQVVDYITYKIDRK
Ga0209229_10000004137F001280AGGAGMCIECGCESVGSESGIETILGGMLNVSTDGEAGLTLNMTATPEQRERFISGE
Ga0209229_10000004138F001176N/AMTTPPNNQPSGAVTSQEAGRKNPSQGKFKSGFSGPRPATKIDTNKHGIRRETVLGQKKTKPKKV
Ga0209229_10000004141F061853N/AMNKKTITLIGLLVALVAVAFAAYNSFSQLKDIDYDLFETEDEDDD
Ga0209229_10000004145F035764AGGMIDWLVNRLFWWTPLRNALLAEATFYNSMTTLLNDPESMKTATAYWNEGDGWRGWTIEDNKYYFNDVPEYDMLSAWEALDEMTDGQRPL
Ga0209229_1000000417F002598AGAAGGMATKLYTIESLLVGKNYRSTNRHFQGEIVSAEPRPEIWYGENTEAYLIEIRTGGLRNKFATIAVKVGE
Ga0209229_1000000420F074868N/AMSDPPARILVLENKERWSQMTTLEKTNIGLALGISGALENRILHDWNNGGAKSTYGLSIWQRKALLKILISESPKCFCVNCLEVK
Ga0209229_1000000421F007363AGGAGMRGYSIVDLLVDQYYKPTSLRRRFNGGIINHAEKREDVYPPEGYEAFAIRYRPTGSLRDEWATVAVRISDY
Ga0209229_1000000423F103145N/AMLSEKTFNKIVFDYQHGGVKNFHPEISLSERKALLKYLFSIPTHKDCECAK
Ga0209229_1000000424F021757N/AMMTRKDYVKTADILSSYKDLIGDEFTYHDLVDDFASMFAEDNSQFNADKFLEACNK
Ga0209229_1000000435F044483N/AMSDRRMVKKIYADQIAYKMNRAEKNVYEDVSKATEALKWMVEKIESYLNKCLNVEDGQCNLSWKHDECKMLMDILYDLTENVKYKESVWRFDPKQEHLWD
Ga0209229_1000000436F002489AGGAMTENNEQPQNLEDNLPMVNYIMLHRIYDLLTLIANKLVGPEDVSKMVEYHNQGYLLGPAPSFTPGYEDNDGSK
Ga0209229_1000000437F021111GGAMENSKDRLNHIETDGGTIKETDAMGREKFWEDLGRPND
Ga0209229_1000000442F008357AGGAGMAGQRNFEVDQNTTFTFTVEYKDNDGDPIVLTNCSAKMQVRDTKGGSKLAFSLTSPSGGIIIDEPNGKLTIKMTPTQTNKLFYPKSSYDIMLTDSNLNKTKLLEGFISLSRSVTL
Ga0209229_1000000458F005054N/AMAEILINSQSPITHNVFWNGDIVEPSSLPVVKLFDVTTDPAISPAINPTQILAVLNSIADENNPGSYIVYIPYSYTSRNRTLRLQWEYQVNGTNVARADEVFVVTPYVDFNHVQDLGFSTDSSDPNYKSYKELIKAEKYARKQIEQHTGQKFYLYDDVAVAYGHGSDILPLSSKIYQIHELYAQDILLLDNINEINNWNYPVEISESGYGIKINRAGLLDNTVYTANGMVPPSINDSSGVFQSGVTYKIQGRFGWEKVPDNVELAAIELMKDYFSKDTMWRNKYVKTISTFDWDFEYTGDAYTGTGNAYADSLLADYVLTTKVEII
Ga0209229_1000000459F001229GAGMNSIVDSVLSMNLDVYRQYEIQDPDTGAIVREWNYYKTIPCHAKGVISNSATTRSSDKQIFSNKYLNDQIIQVRTAEKLTAREKVTNIRDVEGNTIWNEINYPNETPTVFEVMGTTPITDPFGRVIAYNSSMKRSENQQIGQ
Ga0209229_1000000460F001900GGAMMYANQNGPLKDSTVSQISAFVYYEAAVISKLTTNAQFKAAFTKIMFDQIESDFGNYIDALARSKPKSLHHVYEWKKAGNKSARLFKLNKVSEDGLSFKINYTLLPSKSLVPSNNSKRRHVFANKAAVMEEGKPLVIRPKNSERLVFEYEGETVFMPKGKSVTVKRPGGSGSTNQFNLAHSRFFSGRLVNESIKKSGFQRIFNSSMTKALRVPSDIKTVKYSFSANTIRSQADAALAASFGGVM
Ga0209229_1000000461F000258N/AMLELRKYLWKELYTRNIFDEDDYWSDNLNENIIPIIPVQQAAEMNQFLSGKKHMVYDKIGMSYEDNWLICCEQVMFTVYSTSVADINEIRNYMTDEFRRMDESARDINKWVDLSDKFKFHTLWVADISPTAPSEELQGFFSSEIILEIKYSRITDSQGRFL
Ga0209229_1000000464F005479AGAAGMPELINTLQALKKKDHEDKKFFASLKGVEIGEYEDDKKGGPSFEDIQLRAAGIGATSNDVVSLQGNFAAQAGFGIGAGLGYSRE
Ga0209229_1000000466F005053N/AMYLPRGSVLNVEAKDLLATPQGAVKVWNKITEHNRSDISISIERIERSVRTSNGTLRKNHIADKRRFSMSWTMLPSYRNLTVDGGWGAEDLRSFYLSDDGKKEFNIRINLAKSGTDTSSSGALYTPTMANTSSELYTVVFGGCNFSVVKRGLQPHWNVSIELEEV
Ga0209229_1000000469F071173GGAGMITKFGKRFLTSYLAGSESFLNKELAFGIGSTAPNLKGNDTRLEFEFYRIPVELSSFNILQSGVDIDGDPVFNYFVTYKSTIPQDISGVISEIGLYPGGRQSFNNFDSKFITSFTNEFNWFDGSVNPTSQANTQDSNGAYTFLSKVSDSMIRVDVASGQTKEYINTLISDDISGYSINDTISIAYKKADNNVSKIRVKFYSSDLAYYYVDFTPQSGTGDKIQTLSLSNLFSNYTASPNLPDPSSIIKIGVATTATGGATTVYFDAIRINDEDTFDPGYGLISRSILSTPLIKKPGRPVDIEYKLQLDF
Ga0209229_100000047F003663AGGTGGMLSTAVEILEATKNSIFDEDIMGMAGELHTRRNELPDEVYAKYLFMYSAALSSKVADLVTKILLTEQEMSDLIATIDEMDNLSETILEEDNNGE
Ga0209229_1000000478F001464N/AMARENRQRLRKKFVYFFLNGKVHKVLKLSRAKDEVIAWCYPDKKRLMYSYSQVDKGMERAYSVVEASKILGRHRVTIEEYILQGKIKQPQKVYPISNPDSTWSKYMLSESDILDIHQFIIDAGHIRDLPSRSELQAILKHNLILYTKTEDGKFVPVWKAE
Ga0209229_1000000482F005000GAGMRIRLLMTHRKIKRFQIDVEFQDNAQLISLRPQYENLLVQDMRGKGYVRVLDIDPAFSVEFTGETWKFLMSIHGVYVGKKKAWQLEGITQGKSIPRTTRQRTSSRS
Ga0209229_1000000486F004006AGGAGVTENVEGPIQSVSINQILVAILEEHGKITVPTLKFLDAAQTDKELVIDYDETVPSFTFSLRDKIEQQ
Ga0209229_1000000489F025747AGGAGVPNLNEFFHKEEIKAVELERLGGKKPCNKCDKDAEEYFWDATTLTMSWTCPDGHDNSYRI
Ga0209229_1000000492F033808AGGMEIFLLGMMIGFAVGYPMGLFVDKLDKKEKAKNGGR
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