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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2236876002 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0047387 | Gp0054170 | Ga0011255 |
| Sample Name | Marine microbial communities from Columbia River, CM, sample from CR-7km from mouth, GS312-0p8-CR7-chlmax |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of South Carolina |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 79207354 |
| Sequencing Scaffolds | 15 |
| Novel Protein Genes | 15 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| Not Available | 13 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine And Estuarine Microbial Communities From Columbia River Coastal Margin |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → estuary → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Columbia River Transect 7 km from mouth (CR7) | |||||||
| Coordinates | Lat. (o) | 46.167 | Long. (o) | -124.158 | Alt. (m) | N/A | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000918 | Metagenome / Metatranscriptome | 834 | Y |
| F017557 | Metagenome / Metatranscriptome | 240 | Y |
| F025716 | Metagenome / Metatranscriptome | 200 | Y |
| F030252 | Metagenome / Metatranscriptome | 186 | Y |
| F037200 | Metagenome / Metatranscriptome | 168 | Y |
| F060819 | Metagenome / Metatranscriptome | 132 | Y |
| F063161 | Metagenome / Metatranscriptome | 130 | Y |
| F065688 | Metagenome / Metatranscriptome | 127 | N |
| F070056 | Metagenome / Metatranscriptome | 123 | N |
| F074005 | Metagenome / Metatranscriptome | 120 | N |
| F076156 | Metagenome / Metatranscriptome | 118 | N |
| F078573 | Metagenome / Metatranscriptome | 116 | Y |
| F085540 | Metagenome / Metatranscriptome | 111 | N |
| F087745 | Metagenome / Metatranscriptome | 110 | Y |
| F092073 | Metagenome | 107 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| none_p009786 | All Organisms → cellular organisms → Bacteria | 500 | Open in IMG/M |
| none_p029103 | Not Available | 519 | Open in IMG/M |
| none_p050426 | Not Available | 546 | Open in IMG/M |
| none_p063762 | Not Available | 502 | Open in IMG/M |
| none_p067847 | Not Available | 519 | Open in IMG/M |
| none_p068459 | Not Available | 508 | Open in IMG/M |
| none_p072120 | Not Available | 503 | Open in IMG/M |
| none_p075079 | Not Available | 503 | Open in IMG/M |
| none_p087503 | Not Available | 515 | Open in IMG/M |
| none_p106707 | All Organisms → cellular organisms → Bacteria | 529 | Open in IMG/M |
| none_p117532 | Not Available | 501 | Open in IMG/M |
| none_p120058 | Not Available | 512 | Open in IMG/M |
| none_p156188 | Not Available | 510 | Open in IMG/M |
| none_p157436 | Not Available | 513 | Open in IMG/M |
| none_p189497 | Not Available | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| none_p009786 | none_0097862 | F037200 | MTTIITKNGSGAPSAGQLSQGELAVDLTNKQLYSKDLGNNVVKIG |
| none_p029103 | none_0291032 | F070056 | MGKSLEKVLKPDGSEVWELVELREPQPEPEVCKAVRKRKPSKPAEETLPLLLTSDY |
| none_p050426 | none_0504261 | F000918 | MYKTNQQCWDEVSREFDESKRRTKICLEMYGQENLKGLTDEQRDLFWESI |
| none_p063762 | none_0637623 | F060819 | RHHHNHNPETTTVSGVYYMRLPSDVDDLSTAGTELAPNGVEGEGKYITPFKTGQWMIYPGKIWHRPGILQSNENRYIVAADMEF |
| none_p067847 | none_0678471 | F065688 | VKYKLKQCPSTNMENPTIEQDIEHLKRHDSFNRFIDFVKQMREECIAEMYESPTDKIQQLSGRILSYDQILTMSTWGKHSPSE |
| none_p068459 | none_0684592 | F087745 | MSDTTVLLQPVGIVHTPKDLNELESYINRFSSGERMVAFTCAYMAWNLACKLTNPEGRKADDHK |
| none_p072120 | none_0721201 | F025716 | MTDKEVERMINAAGLIGAIFGFISGAGLMALVGIIF |
| none_p075079 | none_0750792 | F074005 | TIDELEAQYYGYNRNFLRKADSPVTTSTAGVFNAIFGAYAWAQLNLEANAFGILPKYPWDKSG |
| none_p087503 | none_0875033 | F017557 | MKGQTHGGKGSAQRSTDQKKFASNWDAIYNKTAQKSS |
| none_p106707 | none_1067072 | F078573 | LFDVLSSPILIVMRLLRWFVGKFMLDGVKNKIKKVAHWTEGKHPLLQIWVWTIMICVVGVVLTLMWLFGQAFAEFIMEEWGNQALNLDE |
| none_p117532 | none_1175321 | F063161 | RQHEYLTKYAWFPTRSTSGKFIWLTEYHIRLTYYDHNGKPPLKGQHFLPYIYTKNEFLLNQIKGT |
| none_p120058 | none_1200582 | F092073 | RQENIYKNYYMKLHKLHTGVIITHIHTDIGISVKARHPKDKDYIVWELLHKTQEFYRGLY |
| none_p156188 | none_1561881 | F085540 | MKALTFLLALVAFTASAAELYLEDGTVIALPVGSKVYVDDGTVWSFTRFDEGGFDIRPLTPLIEVTEVCQDSGFTFGGDSVVCEEEVVVEEEETEECDSLTFGGSGGC |
| none_p157436 | none_1574361 | F030252 | GSNSKPIMIKGKKTGKILGDTGSWYKTENKKKYEANWDAIWGNKESPETKTKAV |
| none_p189497 | none_1894971 | F076156 | MKLIEINNMSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLSGDDYY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |